Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq233229 286 4e-72 seq397590 221 1e-52 seq385137 125 9e-24 seq418222 107 2e-18 seq393904 91.5 2e-13 seq31862 91.5 2e-13 >seq233229 Length=24662 Score = 286 bits (316), Expect = 4e-72 Identities = 266/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || ||||| || ||||| | | | | |||| | ||||| ||||||||||||| Sbjct 20839 AGCAGAGCTTCGATATCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 20898 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 20899 ACGGGAACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGTCGTTGCGG 20958 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 20959 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTG 21018 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 21019 GGCGTGGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGGGCCTTCTCGCCATTCACC 21078 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| ||| || || || |||| ||| Sbjct 21079 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACGTACTTG 21138 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| ||| |||||||| Sbjct 21139 AGGCAATTCAGGATCTCCTCGTTCTTGGCATTTTCCTG 21176 Score = 183 bits (202), Expect = 4e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||| | | || |||| Sbjct 21450 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCTGGGGCCCGAGGC 21509 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| |||||||| || | |||||||| ||||| | Sbjct 21510 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 21569 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | | || ||| |||| || || || |||| Sbjct 21570 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGACCCCAAGTTCACGGGCTCCCCGCCGG 21629 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||||||| || Sbjct 21630 CCAGCGGGCGCGCAGAGAAGGCGTACACCGA 21660 >seq397590 Length=12394 Score = 221 bits (244), Expect = 1e-52 Identities = 282/389 (72%), Gaps = 11/389 (3%) Strand=Plus/Plus Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 ||||||||| || |||| ||||| ||||||||| |||| || ||||||| || ||| Sbjct 11404 CCAGGCCACTTCTTTGCCACACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCCTGAG 11463 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 | | | || | || |||| ||||| ||||| || ||||||||||||||||| | Sbjct 11464 GGCAGTGGCGGCGACACTGGGCGTGGGCAGAGCCTCACGAAGGAAGGCGAAGAGCGGGTA 11523 Query 83278 TGCCCTTGCACCGTTGACCTCGC--------ACTTCTCGAAGAGCATAAAGTTCGGCTCG 83329 ||| | || || ||||||| |||||||||||||||| ||||| |||||| Sbjct 11524 CGCCTGCGAGCCATTCACCTCGCGCTTCTCCACTTCTCGAAGAGCATGAAGTTGGGCTCG 11583 Query 83330 AAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTT 83389 || | ||| || || | ||||| ||| ||| || | ||||||| || ||||||||| Sbjct 11584 AACCTGTTGCCTGGTCTGACGTACTTGAGGCAATTTAGGATCTCG---TTTTGGGCGTTT 11640 Query 83390 TCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 ||||| || || ||| |||| |||| ||| | ||||| ||||| || || | || ||| Sbjct 11641 TCCTGATGCCCAAACCGGTTGCACGTGAAGCTGAGCACAACCAGGCCTCGGGGCCCGAGG 11700 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 ||||| |||||| |||| ||| |||| ||| ||||| | |||| ||| || || Sbjct 11701 AGCCGCCTCAGCTCCTTCACCTGGGTGTCGTCCTGGACCCCTGTGCCTCCGAGCGATGCC 11760 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 | || ||| ||||||| | ||| ||||| Sbjct 11761 AAGTCCTCAATGAGCAGGGCCCTACCCCG 11789 >seq385137 Length=21275 Score = 125 bits (138), Expect = 9e-24 Identities = 195/268 (73%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || || ||| Sbjct 6586 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCACGCCTGC 6644 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 6645 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 6704 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGC-GCTTGCTCCGGCACTA 50586 ||||||| |||||||| |||| || |||||| ||| | |||| |||| ||||| Sbjct 6705 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTTA-TCCGCCACTA 6762 Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGG 50645 |||||| |||| ||||| ||| || || ||||| |||| ||| ||||| ||| Sbjct 6763 CGTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTGG 6821 Query 50646 CGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 6822 GCAAACTGGACGAGCGCTGCCGGCGCCG 6849 >seq418222 Length=65063 Score = 107 bits (118), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| || | || |||||||| | || ||| | ||| ||||||||||| | |||| Sbjct 24341 CAGGGCTTCAACGTTGGGCTCCATGTCCCTGGTTGGAAAGCAGTGGCTGTACCCGTGCAC 24282 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| || | ||||||| | ||||||| ||||||||||||||||| || ||| Sbjct 24281 AGGCACATTGTTGGGGCCCACCAGGGACTTCTCCAAGTTCCAGGCCACGTCACGGCAGCA 24222 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 | ||| || ||||| | | || |||| | ||| ||| | | || ||| | | Sbjct 24221 CGCTGAAGGCCAGGTGAAGTACTTGGGGCCAGTCATGAGTGCAGGGACGTTGTCATTGGA 24162 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||||||||| ||||| | | |||||| ||||||| ||||||| Sbjct 24161 CGCCGGCAGAGCCTCAGGAAAGAAGGC-AAGAGCGAGTGTGCCC 24119 >seq393904 Length=12816 Score = 91.5 bits (100), Expect = 2e-13 Identities = 301/459 (66%), Gaps = 38/459 (8%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| || |||||||| || ||| ||| |||||| | || ||||| ||||||| Sbjct 12109 GAACTTCTCTAACTTCCAGGCAACATCGCTGCAGCACACAG-AGCCCAGGTGATGAGCTT 12051 Query 83203 GGGGTC-GCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGA 83261 || || ||| | ||| || ||||| || ||| |||| ||||| | |||| Sbjct 12050 GGAATCTGCTGAA-AGCA-GCGGTTGTCGGCG---GGCTAGGGCAAGGCCTTCCACAGGA 11996 Query 83262 AGGCGAAGAGCGGATGTGCCCTTGCA--CCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 ||||| | ||| | |||| ||| || || | | | ||||||| ||| ||| | | Sbjct 11995 AGGCGCAAAGCAG--GTGCATCTGCGTGCCATTCATCACACACTTCTGGAAAAGCGTGA- 11939 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 ||| | || | |||| |||||| || | |||| | Sbjct 11938 -------------------CCATCTCTGATGAGCTTGAGGGAATTCAGGCTCTCTTGGTA 11898 Query 83380 CTGGGCGTTTTCCTGGTGACCG-AACTGGTTACACGGGAACCCAAGCACTACCAGCCCCC 83438 || || ||| ||||| || | | |||||||| | ||||| || ||||||||||| || Sbjct 11897 CTTGGTGTTCTCCTGATGCCTGGAACTGGTTGCGTGGGAAGCCCAGCACTACCAGGCCTG 11838 Query 83439 GAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTC 83498 | || || ||||||||| || ||||||||||||| | || | |||| | | || | Sbjct 11837 GGGCAA--AGTTGCCGCTGCACCTGGTTCATCTGAGTGCAGTCTCAGACCTTTGTGCCGC 11780 Query 83499 AGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAG 83558 |||| | || | ||||| ||||| | ||| ||| | | ||| | |||| ||| Sbjct 11779 AGAGCAATGCCGCTTTCTCAATGAGTAGCACCGTGCCAGGCTGGGTGCCCAGGCTCCCAG 11720 Query 83559 GTTCTCCTCCGG--TAATCGGGCGTGCTGAGAAGGCGTA 83595 | || ||| || ||| |||| | | ||||||| ||| Sbjct 11719 GCTC-CCTAAGGGCTAA-CGGGTGCACAGAGAAGGTGTA 11683 >seq31862 Length=20554 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/132 (77%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT-AGG 83449 |||| || | ||||| || | |||||| || ||| | ||||| ||| | || || ||| Sbjct 1229 CCTGTTGCGCAAACTGCTTGCTCGGGAAGCCGAGCGCGACCAGGCCCGGGGCCCCCGAGG 1288 Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTA-CCTCAGAGGGA 83505 |||||||||||||| |||||||| |||| |||||| |||| ||| |||| ||| || Sbjct 1289 TGCCGCCGCTGCAGCTCATTCATCTGGGTGTGGTCCCGGGCCGT-CTAGCCTCCGAGCGA 1347 Query 83506 CGCTACGTTCTC 83517 ||| |||||||| Sbjct 1348 CGCCACGTTCTC 1359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605589628017760