Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq359707 113 4e-20
seq418776 105 6e-18
seq411564 96.9 3e-15
>seq359707
Length=5412
Score = 113 bits (124), Expect = 4e-20
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| |||| |||| || ||||| || || ||| | || || |
Sbjct 2569 CCCCTC--AGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAAG 2626
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || ||| | || |||||||||||||| ||| | || || ||||||||||| ||| |
Sbjct 2627 GAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 2686
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
|||||| || || |||||| ||||| | || || |||| || |||| |
Sbjct 2687 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACCT 2746
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
||| ||| ||||||||||| || || || || || || || ||||||||||
Sbjct 2747 CCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTTGA 2797
>seq418776
Length=96061
Score = 105 bits (116), Expect = 6e-18
Identities = 159/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| |||| ||||| || ||||| || || ||||| || || | |
Sbjct 55102 CCCCTC--AGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAA 55045
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || | | || |||||||||||||| ||| | ||||| ||||||| ||| ||| |
Sbjct 55044 GAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGA 54985
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||||||||| || |||||| ||||| | ||| || |||| || |||| |
Sbjct 54984 TGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCT 54925
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| ||| |||||||||| | | || || || || || |||||
Sbjct 54924 CCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879
>seq411564
Length=61085
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022
||| |||| |||| || ||||| || || ||||| || || | | || || ||||
Sbjct 40457 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTC 40516
Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC--CACGGGCACGCCTTCCTTG 21080
|||||||||||||| ||| | || || ||||||||||| ||| | |||||||||
Sbjct 40517 TTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTA 40576
Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140
|| |||||| ||||| | || || |||| ||||||| |||| ||| |||
Sbjct 40577 TCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 40636
Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| || | || || | || || |||||
Sbjct 40637 GTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420090329485904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |