Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq359707 113 4e-20 seq418776 105 6e-18 seq411564 96.9 3e-15 >seq359707 Length=5412 Score = 113 bits (124), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||| | || || | Sbjct 2569 CCCCTC--AGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAAG 2626 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || ||| | || |||||||||||||| ||| | || || ||||||||||| ||| | Sbjct 2627 GAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 2686 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | || || |||| || |||| | Sbjct 2687 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACCT 2746 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| ||||||||||| || || || || || || || |||||||||| Sbjct 2747 CCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTTGA 2797 >seq418776 Length=96061 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| ||||| || ||||| || || ||||| || || | | Sbjct 55102 CCCCTC--AGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAA 55045 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | | || |||||||||||||| ||| | ||||| ||||||| ||| ||| | Sbjct 55044 GAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGA 54985 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| || |||| | Sbjct 54984 TGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCT 54925 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||| | | || || || || || ||||| Sbjct 54924 CCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq411564 Length=61085 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | | || || |||| Sbjct 40457 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTC 40516 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC--CACGGGCACGCCTTCCTTG 21080 |||||||||||||| ||| | || || ||||||||||| ||| | ||||||||| Sbjct 40517 TTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTA 40576 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || |||||| ||||| | || || |||| ||||||| |||| ||| ||| Sbjct 40577 TCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 40636 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || | || || | || || ||||| Sbjct 40637 GTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420090329485904