Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq366024 271 8e-68 seq404197 269 3e-67 seq359707 118 1e-21 seq411564 111 2e-19 seq418776 98.7 1e-15 seq331670 95.1 1e-14 seq233743 95.1 1e-14 >seq366024 Length=42324 Score = 271 bits (300), Expect = 8e-68 Identities = 535/786 (68%), Gaps = 4/786 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||| ||||||| || || || || || || |||||| || || |||| ||||| Sbjct 17455 GAAAACACCCGCCGCTTTGTCATCTTTCCTATCAAATACCATGATATTTGGCAGATGTAT 17514 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA-CGAG 116709 || || || ||||| || || ||||| | || ||||||||||| |||||||||| || Sbjct 17515 AAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAG 17574 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 | ||||||| | |||| | ||| | ||||||| ||| | ||||| || || Sbjct 17575 C-ACTGGGAAGCCCTGAAGCCTGAGGAGAGATATTTCATTTCGCATATTCTGGCTTTCTT 17633 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC-GTTTCGCTCAGGAGGTGC 116828 || || || || ||||| || || || || |||| |||| |||| || || || || | Sbjct 17634 TGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCAGTTTAGC-CAAGAAGTTC 17692 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 || | | || || || || ||||| ||||| | || |||||||| ||| | || || | Sbjct 17693 AGATTACGGAAGCCCGTTGTTTCTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTG 17752 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 |||||||| |||||| ||||| ||| | ||| | || | | | | | Sbjct 17753 AAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCT 17812 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | ||||| || ||||| ||||| || || || ||||||| || ||||| || |||||| Sbjct 17813 TCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGA 17872 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 ||| | || |||||| | | || || || | || ||||| || || || || || Sbjct 17873 TCGGGGACAAAGAGGCTACGTATGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAA 17932 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 |||||||||| || ||| || | ||||| |||||||| ||||| || || || |||| Sbjct 17933 TCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCTGATACCCG 17992 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 |||| || || ||| || || || ||| ||||||||| | || || |||||||||| Sbjct 17993 GCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCT 18052 Query 117189 GTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCA 117248 | || | ||||| || || | || ||| | | | | |||| | || || Sbjct 18053 GCCTGATATTCAAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAATAAATAATCG 18112 Query 117249 CCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGG 117308 | | || || || || ||| |||||||| || || ||||| ||| || | | Sbjct 18113 TCAATGCAGTTAGAATAGAACAGGAGTTCCTCACGGATGCCCTGCCAGTGAAGCTCATTG 18172 Query 117309 GACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCG 117368 | | |||||| |||| ||| |||||||| ||||| || ||||| || ||| | Sbjct 18173 GGATGAATTGCACTTTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCGGG 18232 Query 117369 AGCTGG 117374 |||||| Sbjct 18233 AGCTGG 18238 >seq404197 Length=65104 Score = 269 bits (298), Expect = 3e-67 Identities = 535/784 (68%), Gaps = 6/784 (1%) Strand=Plus/Plus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||||||||| | || | || || || ||||| || || |||| |||| || Sbjct 52181 AACCCCCGCCGCTCTGTCTTCTTTCCTATCGGATACCGTGATATTTGGCAGATGTGTAAG 52240 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG-AGCGA 116712 || || ||||| || |||||||| | |||||||||||||| |||||||||| ||| Sbjct 52241 AACGCTGAGGCTTCCTTCTGGACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCAC 52300 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC-G 116771 | || ||| || ||| | ||| | |||||| ||| || ||| ||||| || | Sbjct 52301 CGGGAAGCCCT-GAAGCCTGAGGAGAGATATTTCACTTCGCATGTCCTG-CCTTTCTCTG 52358 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT-TTCGCTCAGGAGGTGCAG 116830 | || || |||||| | || || || || ||||| ||||| || || || || || ||| Sbjct 52359 CAGCAAGTGACGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGC-CAAGAAGTTCAG 52417 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 | | || || | | ||||| ||||| || ||||||||||| ||| | || |||||| Sbjct 52418 ATTACGGAAGCCCATTATTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAA 52477 Query 116891 ATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTG 116950 |||||| |||||| ||||| ||| | | ||| | || | | | | || Sbjct 52478 ATGTATAGTCTCCTCATTGACACTTACATTCAAGATTCCAAAGAAAGGGAATTTCTCTTC 52537 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 |||||||| ||||| ||||| || || || ||||||| || ||||| ||||||||||| Sbjct 52538 AACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATC 52597 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | || |||||| | | | |||| | || ||||| || || || || || || Sbjct 52598 GAGGACAAAGAGGCTAGGTACTGAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATC 52657 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 |||||||| || ||| || | ||||| |||||||||||| | || || ||||||||| Sbjct 52658 TTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCCGGC 52717 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || || ||| || || || ||| ||||||||| | || || |||||||||| Sbjct 52718 CTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTTC 52777 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 || ||||||| || || | || ||| | | | | |||| || || || | Sbjct 52778 CTGATGTTCAAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGAAATTATCGTC 52837 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 | || || || || ||| |||||||| || || | | | ||| || | || Sbjct 52838 AATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTGAAGCTCATTGGG 52897 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370 | ||||||| |||| ||| |||||| | ||| | || ||||| || |||| ||| Sbjct 52898 ATGAATTGCGCTTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGAG 52957 Query 117371 CTGG 117374 |||| Sbjct 52958 CTGG 52961 >seq359707 Length=5412 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | || ||||| ||||||||| | || || || || Sbjct 2795 AAAATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGTCC 2736 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || ||||| ||||||||| | || Sbjct 2735 AGTGACACCATCAAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGA 2677 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || |||||||||||||| || | | ||| | || || Sbjct 2676 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCCTTCTGATTA 2617 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 2616 CAGCATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 2565 >seq411564 Length=61085 Score = 111 bits (122), Expect = 2e-19 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||| || || || |||||||| ||||||||| | || || || ||| Sbjct 40671 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 40612 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG--GACC 40807 |||| | | | | | |||| || || | || || || ||||||||| | |||| Sbjct 40611 GACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCCCGACC 40552 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | ||||||| || |||||||||||||| |||| ||||| | || |||| Sbjct 40551 AGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTATTTCTGATTACA 40492 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| ||| | || ||||| || || | || | ||||| ||| Sbjct 40491 ACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGGC 40442 >seq418776 Length=96061 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || | |||| ||||||||| | || || || ||| Sbjct 54879 ATGCAGATCTTCGTGAAGACCCTGANNNGCAAGACCATCACCCTGGAGGTGGAGTCCAGT 54938 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || ||||||||| | ||| || Sbjct 54939 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACTAG 54998 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || |||||||||||||| || | |||| || || |||||| Sbjct 54999 CAGAGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAAC 55058 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || |||| || || | || ||||||| ||| Sbjct 55059 ATCCAGAAAGAGTCAACATTGCACCTGGTCCTCCGTCTGAGGGGTGGC 55106 >seq331670 Length=23129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || || |||| ||||||||| | || || || ||| Sbjct 22182 ATGCAGATCTTCATGAAGACCCTGACCTGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 22123 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| || | | || | | || || | || ||||| ||||||||||| |||||| Sbjct 22122 GACACCGAGAATGTCCTGGATGCCAAGATCCAGGATAAAGAAGGCATCCCCGCTGACCAG 22063 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||| ||| || ||||||||| |||| || | ||||| || || |||||| Sbjct 22062 CAGAGGCTCCTCTTTGCAGGCAAACAGATGGAAGATGGCCGCACTCTTTCTGATTACAAC 22003 Query 40870 ATCCAGAAGGAG 40881 |||||||| ||| Sbjct 22002 ATCCAGAAAGAG 21991 >seq233743 Length=26381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||| ||||||||| | || ||||| | ||||||| || |||||||||||||| Sbjct 21111 GATAAAGAAGGCATCCCCCCTGATCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAA 21170 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || || |||| ||||||||| ||| | || ||||| || || | Sbjct 21171 GACGGCCGCACTCTTTCTGATTACAGCATCCAGAAAGAGTCGACCCTGCACCTGGTCCTC 21230 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 21231 CGTCTGAGGGGTGGC 21245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512504999493440