Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq397970 206 2e-48 seq273439 91.5 1e-13 >seq397970 Length=5258 Score = 206 bits (228), Expect = 2e-48 Identities = 512/772 (66%), Gaps = 9/772 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | |||| ||| || ||| ||| | || ||| Sbjct 2391 TAAACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTCT 2332 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | || || || |||||||| ||| |||| | | || | ||||||||| Sbjct 2331 TCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGC 2272 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAG-AGCATCAATGTGATTCACATAAATGTGAGC 97076 || || |||| |||||| | | || ||| ||||||||||||| |||||||| || Sbjct 2271 CTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGC-TCAATGTGATTCAGGTAAATGTGTGC 2213 Query 97077 ATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 |||||| |||||||| | ||| || || || | | |||| || |||||||| Sbjct 2212 ATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCGATCATG-- 2155 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 || || | ||||| || ||||| || ||||| || || |||||||| |||| || Sbjct 2154 ---TAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCT 2098 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGAC 97255 || || | ||| ||||| |||| || | ||| ||| || ||||| | | | || | Sbjct 2097 CTGGTACAGCTGGCAGGACAGCTCACCGTTCAC-CACGTAGAACTGGCAAAGGGCGTGGC 2039 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | ||||| | ||||| || | |||| |||||||||||||| | ||||||| Sbjct 2038 ACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTC 1979 Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTC 97375 | ||| ||||| || | || || | | | | | | | |||||| || |||| Sbjct 1978 TGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGAT 1919 Query 97376 CACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 | ||||| | | | ||| ||||| || |||||||||||||| || || |||| Sbjct 1918 CTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCAT 1859 Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACC 97495 |||| || || | || |||||| |||| |||| || || | || || || | Sbjct 1858 AAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTC 1799 Query 97496 TAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAG 97555 || ||||| |||||||| || | ||| || | | ||||| || || || | Sbjct 1798 GGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 1739 Query 97556 ATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTG 97615 |||| |||||||||||| ||| || ||| |||||| | || || || | || |||| Sbjct 1738 ATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTGGTTG 1679 Query 97616 TTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 | | |||||||| || | | | |||||| | | |||||| || || || Sbjct 1678 TCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACAC 1627 >seq273439 Length=4507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAG-AGCATCAATGTGATTCACA 97065 ||||||||||||| || || | ||||||| | | || ||| |||||||||| || Sbjct 2456 TTGGGAAAGGCCTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGC-TCAATGTGATCCAGG 2398 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 |||||||| |||||||| |||||||| | | | || || || | | |||| || Sbjct 2397 TAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGT 2338 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 |||||||| | || | || | |||||| || | ||| || | ||| || || ||| | Sbjct 2337 GCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTG 2278 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCT 97219 || |||| || || || | ||| ||||| |||| Sbjct 2277 TCTCCTGACCTCTGGTACAGCTG-CAGGACAGCT 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345002796435080