Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq411564 98.7 9e-16 seq418776 91.5 1e-13 seq359707 84.2 2e-11 seq364176 82.4 7e-11 >seq411564 Length=61085 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || ||||||||||| |||||||| || || Sbjct 40461 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCC 40520 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATC--GGGAGGTATGCCCTCCTTGTCTG 118647 |||||||| || || ||||||| | |||||| || ||| || ||||| ||||| || Sbjct 40521 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCT 40580 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | | || |||||| || ||| ||||| | ||| | || | Sbjct 40581 GGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 40640 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || || | || |||||||| Sbjct 40641 TGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq418776 Length=96061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||| |||||||| || ||||||||||| | ||||| ||| || Sbjct 55087 ACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 55028 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| || | ||||| || || || ||||| ||||| || Sbjct 55027 AGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGG 54968 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 54967 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTG 54908 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || || || || |||||||| Sbjct 54907 CNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq359707 Length=5412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || ||| ||||||| |||| | ||| || Sbjct 2584 ACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCATCTTCC 2643 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | |||||| || || || ||||| || || || Sbjct 2644 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 2703 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | | || |||||| || ||| ||||| | ||| | || ||| Sbjct 2704 ATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTG 2763 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 2764 CCAGTCAAGGTCTTCACGAAGATCTGCAT 2792 >seq364176 Length=18321 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||| | | ||||||||| | || | || ||||| |||||| |||||| || Sbjct 5338 ACCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGA 5397 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | ||||| || ||||| Sbjct 5398 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 5457 Query 118631 TATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || || ||||| || || | || ||||| | | ||| || ||| | |||| Sbjct 5458 AATTCCTTCCTTATCCTGGATCTTGGCGTTTA-CATTTTCTGTTGTATCCAAGGGTTCGA 5516 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | || || || ||||| || || || ||||||||||| Sbjct 5517 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 5565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431602095767248