Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq380682 102 9e-17
seq419945 100 3e-16
seq324078 98.7 1e-15
seq222990 98.7 1e-15
seq393085 93.3 5e-14
seq411564 86.0 7e-12
>seq380682
Length=18948
Score = 102 bits (112), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1898 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1957
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 1958 TATACTAACGAGGA 1971
>seq419945
Length=88941
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 56508 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 56567
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 56568 ATACTAACGAGGA 56580
>seq324078
Length=15205
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 10311 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10252
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 10251 TACTAACGAGGA 10240
>seq222990
Length=16942
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 6157 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6098
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 6097 TACTAACGAGGA 6086
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 3564 CTCCCCGTCGGGGAATCGAACGCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3505
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 3504 TACTAACGAGGA 3493
>seq393085
Length=61302
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 60077 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 60136
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 60137 TATACTAACGAGGA 60150
>seq411564
Length=61085
Score = 86.0 bits (94), Expect = 7e-12
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || |||| ||| | |||| |||| || ||| || || || ||||||||||
Sbjct 40443 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 40502
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC--GGCCG 43074
| ||| || |||| || ||||| || || || || ||||| | ||||||||| || |
Sbjct 40503 ATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 40562
Query 43075 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | || ||||| ||| ||| || || | || | ||||| || | ||||
Sbjct 40563 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCA 40622
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || | |||||||| |||||||| || ||||| | ||||| |||||
Sbjct 40623 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568805236292320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |