Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 309 3e-79
seq404197 248 8e-61
seq418289 107 2e-18
seq400361 102 7e-17
>seq366024
Length=42324
Score = 309 bits (342), Expect = 3e-79
Identities = 608/890 (68%), Gaps = 18/890 (2%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
||||| ||| ||| | ||||| || | |||||||| ||| |||| || || || |||
Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046
|| | ||||||||| |||||||| ||||| ||||||| | || | | | | ||
Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTA 18243
Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105
| |||| ||| || | ||| || ||||| ||||| || ||||| ||||| |||
Sbjct 18242 AAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTG 18183
Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165
|| ||||| || || | || || || | || || || | || | | |||||| ||
Sbjct 18182 CAATTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTA 18123
Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGT 16222
|| || | | |||||| | | | ||| || | || ||| || || | ||||
Sbjct 18122 ACTGCATTGACGATTATTTATTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGT 18066
Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282
|| || || | || ||||| ||||| || || || ||||| || || || | || ||
Sbjct 18065 TTGAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTG 18006
Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342
|||||||| || || || || || ||||||||||| | ||| ||||| | ||||| |||
Sbjct 18005 GAAAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAA 17946
Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TC 16400
||||||||||| || ||||| ||||| ||||| || || || || || || ||||| |
Sbjct 17945 CCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCC 17886
Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460
| ||| | | | ||||| ||||||| ||| || | || ||||| |||
Sbjct 17885 TCTTTGTCC--CCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 17828
Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520
|||| || || || || | | | | |||||||| |||| ||| ||||| || || |
Sbjct 17827 TCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGA 17768
Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580
| | |||||||||||| ||||| || || ||||| || || | || ||||| || || |
Sbjct 17767 GGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAAC 17708
Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640
||||| | || || ||||| | |||| || | |||||||| || ||||| |
Sbjct 17707 GGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGC 17648
Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAA 16699
|||| || |||||||| || || || || || ||| |||| | | || | | || |
Sbjct 17647 CATCACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCA 17588
Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759
| || ||||| || || || || | || |||||||| | |||||||| |||
Sbjct 17587 GGGCTT-CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAA 17529
Query 16760 GCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809
|| |||| || |||||||| | ||| || || | ||| ||||||||
Sbjct 17528 GCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAA 17479
>seq404197
Length=65104
Score = 248 bits (274), Expect = 8e-61
Identities = 506/744 (68%), Gaps = 17/744 (2%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
||||| ||| ||| | ||||| || | |||||||| |||||||| || || || |||
Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046
|| | |||| |||| |||||||| ||||| ||||||| | || | | | | ||
Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTA 52966
Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105
| |||| |||| || | ||| || |||| |||| || ||||| ||||| ||| |
Sbjct 52965 AAACCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCG 52906
Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165
|| ||||| || || | || || | || || || | || | | |||||| ||
Sbjct 52905 CAATTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTA 52846
Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGT 16222
|| || | | ||| || ||| | ||| || | || ||| || || | ||||
Sbjct 52845 ACTGCATTGACGATAATTTCTTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGT 52789
Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282
|| ||||| | | ||||| ||||| || || || ||||| || || || | || ||
Sbjct 52788 TTGAACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTG 52729
Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342
|||||||| || || ||||| ||||||| ||| || | ||| ||||| | ||||| |||
Sbjct 52728 GAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAA 52669
Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TC 16400
||||||||||| || ||||| ||||||||||| || || | |||| | |||| | |
Sbjct 52668 CCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCC 52609
Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460
| ||| | | || ||||| ||||||| ||| || | || ||||| |||
Sbjct 52608 TCTTTGTCC--TCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 52551
Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520
|||| || || || || | | | | |||||||| |||| ||| ||||| || || |
Sbjct 52550 TCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGA 52491
Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580
| | |||||||||||| ||||| || || ||||| || || || || ||||| || |
Sbjct 52490 GGAGACTATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAAT 52431
Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640
||||| | || || ||||| | || || || | | |||||| || |||| |
Sbjct 52430 GGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGC 52371
Query 16641 CATCGCTAGCTGCA-AAAAACGCA 16663
| || || |||||| | ||| |||
Sbjct 52370 CGTCACTTGCTGCAGAGAAAGGCA 52347
>seq418289
Length=29330
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
||||| || || || | || || |||||||| || || ||||| || |||||||||||
Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| ||
Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671
Query 16379 AC 16380
||
Sbjct 26670 AC 26669
>seq400361
Length=55729
Score = 102 bits (112), Expect = 7e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||||| | || ||||||||| | | | | |||||||| |
Sbjct 24152 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 24211
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||
Sbjct 24212 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 24271
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 24272 CCATAAAATCAAAGGGATTTTCTG 24295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460075463658400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |