Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq366024 309 3e-79 seq404197 248 8e-61 seq418289 107 2e-18 seq400361 102 7e-17 >seq366024 Length=42324 Score = 309 bits (342), Expect = 3e-79 Identities = 608/890 (68%), Gaps = 18/890 (2%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||||||| ||| |||| || || || ||| Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046 || | ||||||||| |||||||| ||||| ||||||| | || | | | | || Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTA 18243 Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | |||| ||| || | ||| || ||||| ||||| || ||||| ||||| ||| Sbjct 18242 AAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTG 18183 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || ||||| || || | || || || | || || || | || | | |||||| || Sbjct 18182 CAATTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTA 18123 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGT 16222 || || | | |||||| | | | ||| || | || ||| || || | |||| Sbjct 18122 ACTGCATTGACGATTATTTATTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGT 18066 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || || || | || ||||| ||||| || || || ||||| || || || | || || Sbjct 18065 TTGAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTG 18006 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 |||||||| || || || || || ||||||||||| | ||| ||||| | ||||| ||| Sbjct 18005 GAAAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAA 17946 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TC 16400 ||||||||||| || ||||| ||||| ||||| || || || || || || ||||| | Sbjct 17945 CCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCC 17886 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 | ||| | | | ||||| ||||||| ||| || | || ||||| ||| Sbjct 17885 TCTTTGTCC--CCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 17828 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 |||| || || || || | | | | |||||||| |||| ||| ||||| || || | Sbjct 17827 TCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGA 17768 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | |||||||||||| ||||| || || ||||| || || | || ||||| || || | Sbjct 17767 GGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAAC 17708 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 ||||| | || || ||||| | |||| || | |||||||| || ||||| | Sbjct 17707 GGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGC 17648 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAA 16699 |||| || |||||||| || || || || || ||| |||| | | || | | || | Sbjct 17647 CATCACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCA 17588 Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759 | || ||||| || || || || | || |||||||| | |||||||| ||| Sbjct 17587 GGGCTT-CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAA 17529 Query 16760 GCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 || |||| || |||||||| | ||| || || | ||| |||||||| Sbjct 17528 GCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAA 17479 >seq404197 Length=65104 Score = 248 bits (274), Expect = 8e-61 Identities = 506/744 (68%), Gaps = 17/744 (2%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||||||| |||||||| || || || ||| Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046 || | |||| |||| |||||||| ||||| ||||||| | || | | | | || Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTA 52966 Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | |||| |||| || | ||| || |||| |||| || ||||| ||||| ||| | Sbjct 52965 AAACCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCG 52906 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || ||||| || || | || || | || || || | || | | |||||| || Sbjct 52905 CAATTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTA 52846 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGT 16222 || || | | ||| || ||| | ||| || | || ||| || || | |||| Sbjct 52845 ACTGCATTGACGATAATTTCTTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGT 52789 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || ||||| | | ||||| ||||| || || || ||||| || || || | || || Sbjct 52788 TTGAACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTG 52729 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 |||||||| || || ||||| ||||||| ||| || | ||| ||||| | ||||| ||| Sbjct 52728 GAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAA 52669 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TC 16400 ||||||||||| || ||||| ||||||||||| || || | |||| | |||| | | Sbjct 52668 CCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCC 52609 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 | ||| | | || ||||| ||||||| ||| || | || ||||| ||| Sbjct 52608 TCTTTGTCC--TCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 52551 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 |||| || || || || | | | | |||||||| |||| ||| ||||| || || | Sbjct 52550 TCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGA 52491 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | |||||||||||| ||||| || || ||||| || || || || ||||| || | Sbjct 52490 GGAGACTATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAAT 52431 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 ||||| | || || ||||| | || || || | | |||||| || |||| | Sbjct 52430 GGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGC 52371 Query 16641 CATCGCTAGCTGCA-AAAAACGCA 16663 | || || |||||| | ||| ||| Sbjct 52370 CGTCACTTGCTGCAGAGAAAGGCA 52347 >seq418289 Length=29330 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || |||||||| || || ||||| || ||||||||||| Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671 Query 16379 AC 16380 || Sbjct 26670 AC 26669 >seq400361 Length=55729 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | | |||||||| | Sbjct 24152 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 24211 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 24212 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 24271 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 24272 CCATAAAATCAAAGGGATTTTCTG 24295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460075463658400