Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq375440 2017 0.0 seq366492 109 4e-19 >seq375440 Length=19304 Score = 2017 bits (2236), Expect = 0.0 Identities = 1490/1740 (86%), Gaps = 51/1740 (3%) Strand=Plus/Plus Query 107068 CCAG-TCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGT 107126 |||| |||| | ||| ||||||| || | |||||||| || |||||||| ||| | Sbjct 13495 CCAGATCCTGATCCCAACCCCAGCACGATCAACTGGTTTGTAGTGTCAGGTTATAGACCT 13554 Query 107127 CCATCCACAAG-------------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTA 107173 ||||| || | || ||||||||||||||||||||||||||||||| Sbjct 13555 CCATCAGTGAGCTGGGTGTGTGAAGTTCCTAGGCAGGACTTGACTGAGGATATTTGTCTA 13614 Query 107174 TAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTC--------TG-- 107223 |||||| | |||| ||| |||||||| ||||||||||||||||| | || Sbjct 13615 GAGAAGAAACCTATTTTTGCCATCACTTCGGAGTTGAACTTGATGTACCTTGAGCATGTT 13674 Query 107224 ---GATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACC 107277 | ||||||||||| | ||||||||||||||||||||||||| || ||||||| || Sbjct 13675 CCAGGTTAGTTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATTTCATCCTCCTCCTCC 13734 Query 107278 TTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGA 107337 || |||||||||||||||||| | |||||||| ||||||||||| | ||||| ||||| Sbjct 13735 TTCCCTGTGCCCAAACTCTCCCGGTCTCCCATTCCATGAAGATGATTAAGTGGAGGAAGA 13794 Query 107338 AGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTT 107397 | || ||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 13795 AACTCTGCGGGGGGCATCACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTG 13854 Query 107398 CTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGG 107457 |||||| |||||| |||||||| |||||||| |||||||| |||||||||| ||||||| Sbjct 13855 CTCTGAAACTTTCTCTCAGGTTAAAATGTGACATAGATTCCCTGGATCTGGAATCCAGGG 13914 Query 107458 ACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGA 107517 |||||| || |||| |||||||||||| |||||||| |||||||||||||||||||| Sbjct 13915 ACTTCCGAAGCCAGCGCTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGA 13974 Query 107518 GATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCC 107577 ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 13975 GATCCATCAACTGTTCTGGGATCACCCGAGGGGACCAGGAAGCAGTGGTCAAGGCTCTCC 14034 Query 107578 TAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACA 107637 | ||||| |||||||| ||||| |||||| |||| |||| | |||| |||||||||||| Sbjct 14035 TGGACAATCTGGAAGTCAAGAAGAAGCGGGAGCCTTTCACAGACACCGATTACCTCAACA 14094 Query 107638 TAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 | |||||||||||||||| || || |||| ||||||||||| |||||||||||||| | Sbjct 14095 TGACCAGAGACTGTGAGCAGTTTAAATCCCAGAGGAAGTTCATCCAGTTCCCACTGAGCA 14154 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 14155 GAGAAGAGTTAGACTTCCCCATCGCCTACTCTGTGGTGGTCCATGAGAAGATTGAAAACT 14214 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 14215 TCGAACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTCCATGTGGATG 14274 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 14275 AGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATCATTTCCTGCTTCCCAAATG 14334 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| Sbjct 14335 TCTTCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTG 14394 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 14395 ACCTGAACTGTATGGAAGACTTGCTCCGGAGCTCAGTGCCATGGAAATACTTACTGAATA 14454 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | || |||||||| || || |||||||||||||| ||||||||||||||||||||||||| Sbjct 14455 CGTGTGGGACAGATTTTCCTATAAAGACCAATGCTGAGATGGTCCTGGCCCTCAAGATGT 14514 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 |||| || ||||||||||||||||| ||| ||||| |||||| |||||| |||||||| Sbjct 14515 TGAATGGGAAGAACAGTATGGAGTCCGAGATACCTACTGAGTACAAAAAGTCTCGCTGGA 14574 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 |||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 14575 AATACCACTATGAGGTGACAGACACATTGCACCTAACCAGCAAGATGAAGGACCCTCCCC 14634 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 ||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 14635 CTGATAACTTACCTGTGTTCACGGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCC 14694 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 ||||||||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||| Sbjct 14695 AACATGTCTTAGAGAACCCCAAATCCCAAAGACTGATCGAATGGGCAAAAGACACCTATA 14754 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTC 108357 |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 14755 GCCCGGATGAACACCTCTGGGCCACCCTTCAGCGTGCACCGTGGATGCCTGGCTCTGTCC 14814 Query 108358 CTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGC 108417 | ||||||||||| |||||||||||||||||| ||||| |||||||| ||||| |||| Sbjct 14815 CCTACCACCCCAAGTTTCACATCTCAGACATGACCGCCATTGCCAGGCTGGTCAAATGGC 14874 Query 108418 AGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATC 108477 || ||| |||||||| |||| |||||||| ||||||||||| |||||||||||||| | Sbjct 14875 AGCTCCATGAGGGAGACATCAGTATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACC 14934 Query 108478 GGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACC 108537 | |||| ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||| Sbjct 14935 AGCGGGCTATCTGCATTTATGGGGCTGGGGACCTGCACTGGATTCTTCAGAATCATCACC 14994 Query 108538 TCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGT 108597 ||||||| |||||||||||||| | |||||| |||||||| ||||||||||||||||||| Sbjct 14995 TCTTGGCGAACAAGTTTGACCCAAAGGTGGACGATAACGTTCTGCAGTGCTTAGAAGAGT 15054 Query 108598 ACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG----------------CTGCA 108641 | ||||| ||||||||||||||||||||||||| |||| |||| Sbjct 15055 ATTTACGTTATAAGGCCATCTATGGGACTGAACTCTGAGAAACACCGTGAGAGGATTGCA 15114 Query 108642 --CTGTGGGCCAGGGAC-TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGG 108698 | | ||| |||| || ||| | ||| |||| || | |||| || ||||||||||| Sbjct 15115 ACCCGAGGGGCAGGAACATGTACAAACGTGCCTAGAACACGCTGGGACAGTGTGGGGTGG 15174 Query 108699 GGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCTTTGATGGGGT 108758 | ||| |||||| ||||||||||||| |||||| ||||||| |||||||| | |||||| Sbjct 15175 GAGACCAGGGCTCTGGAATCCATGGCCTCCCCCTGGGTCAGGGGGCTGCTCT--TGGGGT 15232 >seq366492 Length=15653 Score = 109 bits (120), Expect = 4e-19 Identities = 568/891 (64%), Gaps = 33/891 (4%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || | ||||| ||| | || Sbjct 5269 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTGTAGTGGTTCATCACAAA 5328 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | || | ||| |||||||| | || || | Sbjct 5329 ATTGAAATGCTTGACAGGCTCCTGAGGGCTATTTATATGCCTCAGAATTTCTATTGCATT 5388 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||||||| || || || | || | || || | | |||| ||||| Sbjct 5389 CACGTGGATACAAAATCAGAGGAATCCTTTTTGGCCGCAGTGATTGGCATTGCATCCTGT 5448 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| ||||||||| |||||||| || ||| || || ||||| || ||| | | Sbjct 5449 TTCAGTAATGTCTTCGTGGCCAGTCAGCTGGAGAGTGTTGTGTATGCATCTTGGAGCCGG 5508 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || | || | | || ||||||| Sbjct 5509 GTTCAGGCTGACCTCAACTGCATGCAGGACCT-CTACCGAA-TGAACGCAGACTGGAAGT 5566 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || || || || ||||| || || ||| | Sbjct 5567 ACTTGATAAATCTCTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 5626 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| ||| | ||| |||||| | || | ||| | || || | | Sbjct 5627 AGCTCAAGTCGTTAATGGGCGAGAACAACCTAGAAACAGAGAGAATGCCATCCAAT---A 5683 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AG--GTGACAGACACACTGT--ACCCT----A 108153 ||||| | | |||||| | | |||| || |||| | | ||| | | | | Sbjct 5684 AAAAAGAGAGGTGGAAAAAGCATTATGCAGTCGTGAATGGAAAGCTGACAAACATGGGGA 5743 Query 108154 CCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 || ||| || | ||||| | ||| | ||| |||| |||| | |||||||| Sbjct 5744 CCGACAAAATACAT---CCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTGCCTATT 5797 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273 |||||| | | | | ||| | |||| | || || ||| |||| || Sbjct 5798 TTGTGGTCAGTAGGAGGTATGTGGAGTATGTGCTCGAGAATGAAAAAATACAAAAGCTTA 5857 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 | || |||| |||||||| || ||||| ||||| | ||||||||||| ||||| | | Sbjct 5858 TGGAGTGGGCAAAAGACACATACAGCCCGGACGAGTATCTCTGGGCCACTATTCAGAG-G 5916 Query 108334 CTCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| | | | || || || | |||| ||||| ||||| |||| || |||||| Sbjct 5917 ATCCCCGAAGTCCCAGGGTCACTGTCCTTAAGCCA---TAAGTACGACATGTCCGACATG 5973 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 || || |||||| | ||||||||||||||| || || || | || ||| || Sbjct 5974 CACGCGATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCC 6033 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || | || ||| || |||| | | || | ||| ||| ||| || || ||| Sbjct 6034 CCCTACCCGCCGTGCAGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCGGGTGAC 6093 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||||| | | || ||| | || || |||||||| ||| || Sbjct 6094 TTGAACTGGATGTTGCGCGTGCACCACTTGTTCGCCAACAAGTTCGACACG 6144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346479969984456