Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 269 2e-67
seq273439 158 1e-33
>seq397970
Length=5258
Score = 269 bits (298), Expect = 2e-67
Identities = 538/797 (68%), Gaps = 5/797 (1%)
Strand=Plus/Plus
Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037
|| || || || || || || | || || || || ||||| | || || | | |||||
Sbjct 1600 GACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAGA 1659
Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097
|||||||||| | | || || ||||| || || || || || ||| || |||||
Sbjct 1660 GATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTG 1719
Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157
| |||||||| || ||||| ||||| ||| ||||| || ||||| || ||
Sbjct 1720 CTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATC 1779
Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217
||| || |||| || | || || ||||| ||||| || | | |||
Sbjct 1780 TGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAA 1839
Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277
|||||||| || || || ||||| ||||| ||||| |||||||| || ||||| ||
Sbjct 1840 GGGGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGAT 1899
Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337
||| | || |||||| | ||||||||||||||| | ||||| || | | | |||
Sbjct 1900 ATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 1959
Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397
||||| ||||| ||||||||||||| || | || || ||||| | |||||| | |||
Sbjct 1960 AAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCT 2019
Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457
| ||||| | || || || || || ||||| || ||||| | || ||| ||
Sbjct 2020 CTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTG 2079
Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517
|| || || |||| || | || | |||||||| |||||||| || ||||| || ||
Sbjct 2080 TCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCGCC 2139
Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577
|| || || |||| || ||||| ||||| | || | | || | ||||||||
Sbjct 2140 AGCTACGCCCTGC-----TACATGATCGCACACATCACGGGCCTGAAGCCAGGTGACTTT 2194
Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637
|| ||||| | ||||| || || |||||||| ||||| || || | | ||| | |||
Sbjct 2195 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCTGCTGAAAATTCAG 2254
Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697
| ||| |||||| | ||||| | || | || ||||| ||| | | |||
Sbjct 2255 CTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAAGTTGAGAAAATT 2314
Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757
| || || || ||||| || ||| | | ||||| || ||||| || | ||| |
Sbjct 2315 GATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAA 2374
Query 20758 ATGGAAATGTCTGTTTA 20774
||||||||| |||||||
Sbjct 2375 ATGGAAATGGCTGTTTA 2391
>seq273439
Length=4507
Score = 158 bits (174), Expect = 1e-33
Identities = 375/563 (67%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272
|||| |||||||| || || || || | ||||| ||||| ||| | ||||||||
Sbjct 2016 AAGAAGGGGATTTAGGCCCAGTTCATAGCTTTCAGTGGAGGTCTTTGGTGGCTGAATACA 2075
Query 20273 TTGACATGAACACAAAT-TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331
|| || | |||| |||| | ||||||||||| ||| | ||||| || ||| |
Sbjct 2076 AAGATGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGAC 2135
Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391
||| ||||| || || | ||||||||||| ||| |||| || ||||| | ||||||
Sbjct 2136 ACAATCAAAACCAAACCTGAAGACAGAAGAATCATTCTATGTGCTTGGAA-TCAAAAGAT 2194
Query 20392 GTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAAT 20451
| ||| | || | |||| || || ||||| || ||||| | || ||
Sbjct 2195 CTTCCTCTCAT-ACCCTGCCGCC----------CTTTGCCACTTCTACGTGGTGAACCAT 2243
Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511
|| |||| || || |||| || | || | || | ||| |||||||| | |||||
Sbjct 2244 GAGCTGTCCTG-CAGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAAC 2302
Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGT 20571
| || || ||||| ||||| || || ||||| ||||| | |||| | || | |||
Sbjct 2303 GTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGT 2362
Query 20572 GACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAA 20631
|||| || ||||| | ||||| || || |||||||| |||| || || | | |||
Sbjct 2363 GACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGAGCTGCTGAAA 2422
Query 20632 TTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAA 20691
| ||| | || |||||| | ||||||| || || | ||| ||| |
Sbjct 2423 ATGCAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAG 2482
Query 20692 GATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCA 20751
| || | || || || ||||| || ||| | | ||||| || | ||||||| |
Sbjct 2483 AAAATCTATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACT 2542
Query 20752 ATTCCAATGGAAATGTCTGTTTA 20774
||| |||||||||| |||||||
Sbjct 2543 ATTAAAATGGAAATGGCTGTTTA 2565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397133651760580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |