Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq397970 269 2e-67 seq273439 158 1e-33 >seq397970 Length=5258 Score = 269 bits (298), Expect = 2e-67 Identities = 538/797 (68%), Gaps = 5/797 (1%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || | || || || || ||||| | || || | | ||||| Sbjct 1600 GACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAGA 1659 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || || || || ||| || ||||| Sbjct 1660 GATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTG 1719 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| ||||| ||| ||||| || ||||| || || Sbjct 1720 CTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATC 1779 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| || |||| || | || || ||||| ||||| || | | ||| Sbjct 1780 TGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAA 1839 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 |||||||| || || || ||||| ||||| ||||| |||||||| || ||||| || Sbjct 1840 GGGGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGAT 1899 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | || |||||| | ||||||||||||||| | ||||| || | | | ||| Sbjct 1900 ATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 1959 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| ||||||||||||| || | || || ||||| | |||||| | ||| Sbjct 1960 AAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCT 2019 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||||| | || || || || || ||||| || ||||| | || ||| || Sbjct 2020 CTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTG 2079 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || |||| || | || | |||||||| |||||||| || ||||| || || Sbjct 2080 TCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCGCC 2139 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || || || |||| || ||||| ||||| | || | | || | |||||||| Sbjct 2140 AGCTACGCCCTGC-----TACATGATCGCACACATCACGGGCCTGAAGCCAGGTGACTTT 2194 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || ||||| | ||||| || || |||||||| ||||| || || | | ||| | ||| Sbjct 2195 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCTGCTGAAAATTCAG 2254 Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697 | ||| |||||| | ||||| | || | || ||||| ||| | | ||| Sbjct 2255 CTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAAGTTGAGAAAATT 2314 Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757 | || || || ||||| || ||| | | ||||| || ||||| || | ||| | Sbjct 2315 GATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAA 2374 Query 20758 ATGGAAATGTCTGTTTA 20774 ||||||||| ||||||| Sbjct 2375 ATGGAAATGGCTGTTTA 2391 >seq273439 Length=4507 Score = 158 bits (174), Expect = 1e-33 Identities = 375/563 (67%), Gaps = 14/563 (2%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| |||||||| || || || || | ||||| ||||| ||| | |||||||| Sbjct 2016 AAGAAGGGGATTTAGGCCCAGTTCATAGCTTTCAGTGGAGGTCTTTGGTGGCTGAATACA 2075 Query 20273 TTGACATGAACACAAAT-TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 || || | |||| |||| | ||||||||||| ||| | ||||| || ||| | Sbjct 2076 AAGATGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGAC 2135 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 ||| ||||| || || | ||||||||||| ||| |||| || ||||| | |||||| Sbjct 2136 ACAATCAAAACCAAACCTGAAGACAGAAGAATCATTCTATGTGCTTGGAA-TCAAAAGAT 2194 Query 20392 GTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAAT 20451 | ||| | || | |||| || || ||||| || ||||| | || || Sbjct 2195 CTTCCTCTCAT-ACCCTGCCGCC----------CTTTGCCACTTCTACGTGGTGAACCAT 2243 Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 || |||| || || |||| || | || | || | ||| |||||||| | ||||| Sbjct 2244 GAGCTGTCCTG-CAGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAAC 2302 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGT 20571 | || || ||||| ||||| || || ||||| ||||| | |||| | || | ||| Sbjct 2303 GTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGT 2362 Query 20572 GACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAA 20631 |||| || ||||| | ||||| || || |||||||| |||| || || | | ||| Sbjct 2363 GACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGAGCTGCTGAAA 2422 Query 20632 TTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAA 20691 | ||| | || |||||| | ||||||| || || | ||| ||| | Sbjct 2423 ATGCAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAG 2482 Query 20692 GATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCA 20751 | || | || || || ||||| || ||| | | ||||| || | ||||||| | Sbjct 2483 AAAATCTATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACT 2542 Query 20752 ATTCCAATGGAAATGTCTGTTTA 20774 ||| |||||||||| ||||||| Sbjct 2543 ATTAAAATGGAAATGGCTGTTTA 2565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397133651760580