Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq404197 131 1e-25
seq327453 116 3e-21
seq336898 102 7e-17
seq411564 91.5 1e-13
seq393589 89.7 5e-13
seq364176 89.7 5e-13
seq258579 82.4 7e-11
>seq404197
Length=65104
Score = 131 bits (144), Expect = 1e-25
Identities = 572/893 (64%), Gaps = 18/893 (2%)
Strand=Plus/Plus
Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587
|| ||||| | | |||| | ||||| || | ||| | || |||||| | |||| ||
Sbjct 52181 AACCCCCGCCGCTCTGTCTTCTTTCCTATCGGATACCGTGATATTTGGCAGATGTGTAAG 52240
Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG-AGCGA 57646
|| || || || || || ||||| | || || || ||||| || ||||| | ||| |
Sbjct 52241 AACGCTGAGGCTTCCTTCTGGACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGC-A 52299
Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706
|||| |||| || |||||| |||| | | || || || | || | ||
Sbjct 52300 CCGGGAAGCCCTGAAGCCTGAGGAGAGATATTTCACTTCGCATGTCCTGCCTTTCTCTGC 52359
Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766
||| || || | || || || || |||| || | || |||||||| || |
Sbjct 52360 AGCAAGTGACGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGTTCAGAT 52419
Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826
||||| || | || || || || ||| | ||||| |||||| | ||||| |||||
Sbjct 52420 TACGGAAGCCCATTATTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAAAT 52479
Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTC 57884
|||| || ||||| || || ||| | | || | | ||||| | | || |||
Sbjct 52480 GTATAGTCTCCTCATTGACACTTACATTCAAGATTCCAA--AGAAAGGGAATTTCTCTTC 52537
Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944
||||| || || |||||||| | ||||||||||| ||| | | |||||
Sbjct 52538 AACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATC 52597
Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004
| | ||| | || | || | | | || || ||||| || ||||| ||
Sbjct 52598 GAGGACAAAGAGGCTAGGTACTGAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATC 52657
Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064
|||||||| || ||||| | ||||| ||| | |||||| | || ||||||||||||
Sbjct 52658 TTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCCGGC 52717
Query 58065 CTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTG 58123
|| || ||| ||| || | || | || | ||||||||| | || ||| ||||| |
Sbjct 52718 CTCACATTTTCCAATGAACTTAT-TAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTT 52776
Query 58124 CCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCAC 58183
||| |||| | ||| | | | ||||| || | | | || || ||||||
Sbjct 52777 CCTGATGTTCAAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGAAATTATCGT 52836
Query 58184 CGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC-- 58241
| | || || ||| ||| | ||||| |||| || |||| | ||| | ||||
Sbjct 52837 CAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTG---AAGCTCAT 52893
Query 58242 -GGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300
|| ||||| | ||||||| ||||||| | || | || ||||||||| ||||
Sbjct 52894 TGGGATGAATTGCGCTTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCT 52953
Query 58301 CGAACT-GATTGGAG-AGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358
|| || | || || | || || || ||||||| ||||| |||||| |
Sbjct 52954 GGAGCTGGGTTTTAGCAAGGT--TTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAAT 53011
Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCA 58411
| || || || || ||||| ||||| || || || | ||| |||| |||||
Sbjct 53012 AGTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 53064
>seq327453
Length=26950
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| || || || ||||| || || |||||
Sbjct 25144 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 25203
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|| | || ||||||||| || ||||| || ||||| ||||||||||||||||| ||
Sbjct 25204 CCTAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 25263
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 25264 CCTGTCTCTGTCTGAGACTCAATGATGGC 25292
>seq336898
Length=33758
Score = 102 bits (112), Expect = 7e-17
Identities = 160/224 (71%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||| | ||||| |||||||| | | ||||| |||| ||||||||
Sbjct 29645 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCC 29704
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307
|| || | | |||| ||| | || ||| |||||||||||| | || || |
Sbjct 29705 TCGGATACAATAGAAAAATGTAAAG-GCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTG 29763
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366
||||||| || || || |||||||| || ||||||| | | | ||| || ||
Sbjct 29764 ACCAGCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 29822
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| ||||||||||| || || ||||||||||| ||| | |||||
Sbjct 29823 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACT 29866
>seq411564
Length=61085
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || |||| ||||| ||||| ||||| || |||||| | || || || ||
Sbjct 40671 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 40612
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC--GACC 31310
|||| || | | || || | || ||| ||||||||| | || ||| ||||
Sbjct 40611 GACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCCCGACC 40552
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
||||| | || || || || ||||||||| |||||||| ||||| ||||| |
Sbjct 40551 AGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTATTTCTGATTACA 40492
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||| || ||||| || || || || ||||| || | || ||||| ||
Sbjct 40491 ACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGG 40443
>seq393589
Length=19132
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253
|||| |||||| | ||||| |||||||| || || ||||| || | |||||||| | |
Sbjct 7846 TGCAGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAACCCTTGG 7904
Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313
| | | |||| || || | || |||||||||||| | | || |||||||
Sbjct 7905 ATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 7964
Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372
| | || || || |||||||| || ||||||| | | | ||| || || || |||
Sbjct 7965 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTACAAC 8023
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|||||||| || || |||||||||| || | |||||
Sbjct 8024 ATTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 8061
>seq364176
Length=18321
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/224 (71%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || || ||||| |||| || |||||
Sbjct 5568 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 5509
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307
| || | |||| || |||| | || | | ||| |||||||| | || || |
Sbjct 5508 TTGGATACAACAGAAAATGT-AAAC-GCCAAGATCCAGGATAAGGAAGGAATTCCTCCTG 5451
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366
||||||| | || || || |||||||| || ||||||| | | | ||| || ||
Sbjct 5450 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 5392
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
| |||| |||||| || || ||||||||||| || | |||||
Sbjct 5391 CACAACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 5348
>seq258579
Length=20613
Score = 82.4 bits (90), Expect = 7e-11
Identities = 153/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || || ||||| | || || |||||
Sbjct 18966 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 19025
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||| || || | || |||||||||||| | || || |||
Sbjct 19026 TCGGATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 19085
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || || ||||| || ||||||| | | | | | || || ||
Sbjct 19086 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGA-TGGACGTATTTTGTCTGACTA 19144
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||| ||||||| || || |||||||||| || | |||||
Sbjct 19145 CAACGTTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 19186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443418080316480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |