Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq404197 131 1e-25 seq327453 116 3e-21 seq336898 102 7e-17 seq411564 91.5 1e-13 seq393589 89.7 5e-13 seq364176 89.7 5e-13 seq258579 82.4 7e-11 >seq404197 Length=65104 Score = 131 bits (144), Expect = 1e-25 Identities = 572/893 (64%), Gaps = 18/893 (2%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 || ||||| | | |||| | ||||| || | ||| | || |||||| | |||| || Sbjct 52181 AACCCCCGCCGCTCTGTCTTCTTTCCTATCGGATACCGTGATATTTGGCAGATGTGTAAG 52240 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG-AGCGA 57646 || || || || || || ||||| | || || || ||||| || ||||| | ||| | Sbjct 52241 AACGCTGAGGCTTCCTTCTGGACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGC-A 52299 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 |||| |||| || |||||| |||| | | || || || | || | || Sbjct 52300 CCGGGAAGCCCTGAAGCCTGAGGAGAGATATTTCACTTCGCATGTCCTGCCTTTCTCTGC 52359 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766 ||| || || | || || || || |||| || | || |||||||| || | Sbjct 52360 AGCAAGTGACGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGTTCAGAT 52419 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 ||||| || | || || || || ||| | ||||| |||||| | ||||| ||||| Sbjct 52420 TACGGAAGCCCATTATTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAAAT 52479 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTC 57884 |||| || ||||| || || ||| | | || | | ||||| | | || ||| Sbjct 52480 GTATAGTCTCCTCATTGACACTTACATTCAAGATTCCAA--AGAAAGGGAATTTCTCTTC 52537 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 ||||| || || |||||||| | ||||||||||| ||| | | ||||| Sbjct 52538 AACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATC 52597 Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 | | ||| | || | || | | | || || ||||| || ||||| || Sbjct 52598 GAGGACAAAGAGGCTAGGTACTGAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATC 52657 Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064 |||||||| || ||||| | ||||| ||| | |||||| | || |||||||||||| Sbjct 52658 TTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCCGGC 52717 Query 58065 CTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || ||| ||| || | || | || | ||||||||| | || ||| ||||| | Sbjct 52718 CTCACATTTTCCAATGAACTTAT-TAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTT 52776 Query 58124 CCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCAC 58183 ||| |||| | ||| | | | ||||| || | | | || || |||||| Sbjct 52777 CCTGATGTTCAAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGAAATTATCGT 52836 Query 58184 CGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC-- 58241 | | || || ||| ||| | ||||| |||| || |||| | ||| | |||| Sbjct 52837 CAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTG---AAGCTCAT 52893 Query 58242 -GGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 || ||||| | ||||||| ||||||| | || | || ||||||||| |||| Sbjct 52894 TGGGATGAATTGCGCTTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCT 52953 Query 58301 CGAACT-GATTGGAG-AGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358 || || | || || | || || || ||||||| ||||| |||||| | Sbjct 52954 GGAGCTGGGTTTTAGCAAGGT--TTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAAT 53011 Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCA 58411 | || || || || ||||| ||||| || || || | ||| |||| ||||| Sbjct 53012 AGTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 53064 >seq327453 Length=26950 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 25144 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 25203 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 25204 CCTAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 25263 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 25264 CCTGTCTCTGTCTGAGACTCAATGATGGC 25292 >seq336898 Length=33758 Score = 102 bits (112), Expect = 7e-17 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | ||||| |||||||| | | ||||| |||| |||||||| Sbjct 29645 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCC 29704 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307 || || | | |||| ||| | || ||| |||||||||||| | || || | Sbjct 29705 TCGGATACAATAGAAAAATGTAAAG-GCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTG 29763 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 ||||||| || || || |||||||| || ||||||| | | | ||| || || Sbjct 29764 ACCAGCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 29822 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || ||||||||||| ||| | ||||| Sbjct 29823 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACT 29866 >seq411564 Length=61085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 40671 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 40612 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC--GACC 31310 |||| || | | || || | || ||| ||||||||| | || ||| |||| Sbjct 40611 GACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCCCGACC 40552 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || ||||||||| |||||||| ||||| ||||| | Sbjct 40551 AGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTATTTCTGATTACA 40492 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || ||||| || || || || ||||| || | || ||||| || Sbjct 40491 ACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGG 40443 >seq393589 Length=19132 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||| | ||||| |||||||| || || ||||| || | |||||||| | | Sbjct 7846 TGCAGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAACCCTTGG 7904 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | | |||| || || | || |||||||||||| | | || ||||||| Sbjct 7905 ATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 7964 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || |||||||| || ||||||| | | | ||| || || || ||| Sbjct 7965 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTACAAC 8023 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || |||||||||| || | ||||| Sbjct 8024 ATTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 8061 >seq364176 Length=18321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 5568 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 5509 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307 | || | |||| || |||| | || | | ||| |||||||| | || || | Sbjct 5508 TTGGATACAACAGAAAATGT-AAAC-GCCAAGATCCAGGATAAGGAAGGAATTCCTCCTG 5451 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 ||||||| | || || || |||||||| || ||||||| | | | ||| || || Sbjct 5450 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 5392 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | |||| |||||| || || ||||||||||| || | ||||| Sbjct 5391 CACAACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 5348 >seq258579 Length=20613 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| | || || ||||| Sbjct 18966 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 19025 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | || |||||||||||| | || || ||| Sbjct 19026 TCGGATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 19085 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || || ||||| || ||||||| | | | | | || || || Sbjct 19086 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGA-TGGACGTATTTTGTCTGACTA 19144 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| ||||||| || || |||||||||| || | ||||| Sbjct 19145 CAACGTTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 19186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443418080316480