Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq366024 138 2e-27 seq404197 118 2e-21 seq418289 86.0 1e-11 >seq366024 Length=42324 Score = 138 bits (152), Expect = 2e-27 Identities = 298/441 (68%), Gaps = 11/441 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 17908 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 17967 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | ||| | | || || ||||| | |||||||| | ||| || ||| Sbjct 17968 CTCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 18027 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | |||||||| ||| || | || ||| | | | | | || Sbjct 18028 GAGGGTTTACACTGTGACTTTGCCTGCCTGATATTCAAACA---CCTGCTACACAAACCT 18084 Query 102098 TCAAGAGAAAGGATTC--TTGA--AATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 || ||| | || || | | ||| |||| | || || |||| ||||| || || Sbjct 18085 TC-GGAGCAGAGAGTCAAATAAATAATCGTCA---ATGCAGTTAGAATAGAACAGGAGTT 18140 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||||| | | ||||||| || || | | || ||||| |||| ||||||| ||||| Sbjct 18141 CCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTA 18200 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 ||| ||||| |||||||| | ||| || || |||| | ||| | | || Sbjct 18201 CATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGTTTTCAGAGT 18260 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 || || || || ||||| |||||||| || || ||||| ||||| | ||| Sbjct 18261 AGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGA 18320 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 18321 GAAGAGAGTAGGCGAGTATCA 18341 >seq404197 Length=65104 Score = 118 bits (130), Expect = 2e-21 Identities = 291/438 (66%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 52631 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 52690 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| || ||||| | |||||||| | ||| || ||| Sbjct 52691 CTCAAGAAATGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 52750 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | |||||||| | | || |||| ||| | | | | | || Sbjct 52751 GAGGGTTTACACTGTGACTTTGCCTTCCTGATGTTCAAACA---CCTGCTACACAAACCT 52807 Query 102098 TCAAGAGAAAGGATTC-TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 || ||| | || || |||||| || | || || | || ||||| || || || Sbjct 52808 TC-GGAGCAGAGAGTCAAAGAAATTATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 52866 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||| | ||| | | || || | | || ||||| ||| ||||||| |||||||| Sbjct 52867 CACGGAGGCCCCGACAGTGAAGCTCATTGGGATGAATTGCGCTTTGATGAAGCAGTACAT 52926 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 |||| ||||||| | ||| || | || |||| | ||| | | || Sbjct 52927 CAAATTCCTGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGA 52986 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || || || ||||| |||| ||| || || ||||| ||||| ||||| || Sbjct 52987 AAATCCATTTGACTTTATGGAGAATAGTTCACTGGAAGGGAAGACTAACTTCTTTGAGAA 53046 Query 102337 GAGAGTCGCCGAGTATCA 102354 |||||| | ||||||||| Sbjct 53047 GAGAGTAGGCGAGTATCA 53064 >seq418289 Length=29330 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 26669 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 26728 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | ||| | |||| || ||||| | |||||||| | ||| || ||| Sbjct 26729 CTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 26788 Query 102038 GA 102039 || Sbjct 26789 GA 26790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984240492559020