Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 138 2e-27
seq404197 118 2e-21
seq418289 86.0 1e-11
>seq366024
Length=42324
Score = 138 bits (152), Expect = 2e-27
Identities = 298/441 (68%), Gaps = 11/441 (2%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||||||||| ||||||||||||||| |||| | || ||||| || ||||||
Sbjct 17908 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 17967
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
|||| || | ||| | | || || ||||| | |||||||| | ||| || |||
Sbjct 17968 CTCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 18027
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|| ||| | || | |||||||| ||| || | || ||| | | | | | ||
Sbjct 18028 GAGGGTTTACACTGTGACTTTGCCTGCCTGATATTCAAACA---CCTGCTACACAAACCT 18084
Query 102098 TCAAGAGAAAGGATTC--TTGA--AATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153
|| ||| | || || | | ||| |||| | || || |||| ||||| || ||
Sbjct 18085 TC-GGAGCAGAGAGTCAAATAAATAATCGTCA---ATGCAGTTAGAATAGAACAGGAGTT 18140
Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213
||||| | | ||||||| || || | | || ||||| |||| ||||||| |||||
Sbjct 18141 CCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTA 18200
Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273
||| ||||| |||||||| | ||| || || |||| | ||| | | ||
Sbjct 18201 CATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGTTTTCAGAGT 18260
Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333
|| || || || ||||| |||||||| || || ||||| ||||| | |||
Sbjct 18261 AGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGA 18320
Query 102334 AAAGAGAGTCGCCGAGTATCA 102354
|||||||| | |||||||||
Sbjct 18321 GAAGAGAGTAGGCGAGTATCA 18341
>seq404197
Length=65104
Score = 118 bits (130), Expect = 2e-21
Identities = 291/438 (66%), Gaps = 5/438 (1%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||| ||||| ||||||||||||||| |||| | || ||||| || ||||||
Sbjct 52631 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 52690
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | |||| || ||||| | |||||||| | ||| || |||
Sbjct 52691 CTCAAGAAATGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 52750
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|| ||| | || | |||||||| | | || |||| ||| | | | | | ||
Sbjct 52751 GAGGGTTTACACTGTGACTTTGCCTTCCTGATGTTCAAACA---CCTGCTACACAAACCT 52807
Query 102098 TCAAGAGAAAGGATTC-TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156
|| ||| | || || |||||| || | || || | || ||||| || || ||
Sbjct 52808 TC-GGAGCAGAGAGTCAAAGAAATTATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 52866
Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216
||| | ||| | | || || | | || ||||| ||| ||||||| ||||||||
Sbjct 52867 CACGGAGGCCCCGACAGTGAAGCTCATTGGGATGAATTGCGCTTTGATGAAGCAGTACAT 52926
Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276
|||| ||||||| | ||| || | || |||| | ||| | | ||
Sbjct 52927 CAAATTCCTGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGA 52986
Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336
|| || || || ||||| |||| ||| || || ||||| ||||| ||||| ||
Sbjct 52987 AAATCCATTTGACTTTATGGAGAATAGTTCACTGGAAGGGAAGACTAACTTCTTTGAGAA 53046
Query 102337 GAGAGTCGCCGAGTATCA 102354
|||||| | |||||||||
Sbjct 53047 GAGAGTAGGCGAGTATCA 53064
>seq418289
Length=29330
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||| ||||| ||||||||||||||| |||| | || ||||| || ||||||
Sbjct 26669 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 26728
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
|||| || | ||| | |||| || ||||| | |||||||| | ||| || |||
Sbjct 26729 CTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 26788
Query 102038 GA 102039
||
Sbjct 26789 GA 26790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984240492559020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |