Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 354 8e-93
seq404197 264 1e-65
seq418289 134 1e-26
seq400361 120 3e-22
seq327453 96.9 3e-15
>seq366024
Length=42324
Score = 354 bits (392), Expect = 8e-93
Identities = 618/891 (69%), Gaps = 15/891 (2%)
Strand=Plus/Minus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
||| | |||| | ||||| || | |||| || | || | || |||||||| ||||| |
Sbjct 18354 CACTCTCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTCCCTTCCA 18296
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
|||| |||| |||||||||| ||| ||||| | ||| |||| || || | |||| |
Sbjct 18295 GTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 18236
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
||| | | ||| ||||| |||||||| || ||||| ||| ||| |||||||
Sbjct 18235 GCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCA 18176
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || || || | ||| || | ||| | || | ||||||| |||||| |||| ||||
Sbjct 18175 TCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT 18116
Query 11568 CAATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACA 11624
| |||||| | | | ||| | || || ||| |||| | ||||| || |
Sbjct 18115 TGACGATTATTTA---TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATA 18059
Query 11625 TTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684
| | || ||||| ||||| |||||||| |||||||| || || |||||||| |||||||
Sbjct 18058 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATG 17999
Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744
| | ||||| |||| ||||||||||| | ||| ||||| | ||||| ||||||||||
Sbjct 17998 TGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 17939
Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGC 11801
|||| ||||| ||||| || ||||| ||||| | | ||||||||| || ||| |||
Sbjct 17938 AGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGT 17879
Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861
||||| ||||||||| || ||||| ||||| || |||||| || ||||
Sbjct 17878 CCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAG 17819
Query 11862 CGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919
|||| | | |||| | ||||| | |||| | | || || || || | | |||
Sbjct 17818 CGTTGAAGAGAAATTC--CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACT 17761
Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
||||||||| ||||| || |||||||| || ||| | || ||||||||||| || || ||
Sbjct 17760 ATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTC 17701
Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039
| | ||| || || ||| ||| | || || |||||||| || ||||||||
Sbjct 17700 CGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACT 17641
Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099
| |||||| || || || ||||| || || ||| | || || | | ||
Sbjct 17640 TGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTC 17581
Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159
||| | | | || || || | || || |||||| | |||||||| ||| | |
Sbjct 17580 CCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGC 17521
Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210
|| |||||||| | ||| |||||||| || || ||||| || || || ||
Sbjct 17520 TTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470
>seq404197
Length=65104
Score = 264 bits (292), Expect = 1e-65
Identities = 455/649 (70%), Gaps = 15/649 (2%)
Strand=Plus/Minus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
||| |||||| | ||||| || | |||| || | || || || |||||||| ||||| |
Sbjct 53077 CACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 53019
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
|||| ||| |||||||||| ||| ||||| | ||| |||| || || | |||| |
Sbjct 53018 GTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 52959
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
||| | | ||| ||||| | ||||| || ||||| ||| ||| |||||||
Sbjct 52958 GCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCA 52899
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || || || | ||| | || | || | ||||||| |||||| |||| ||||
Sbjct 52898 TCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 52839
Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626
| ||| || | || || | || || ||| |||| | ||||| |||||
Sbjct 52838 TGACGATAATTT-CTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATC 52780
Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686
| | ||||| ||||| |||||||| |||||||| || || |||||||| ||||||||
Sbjct 52779 AGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTG 52720
Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746
| |||||||||| ||||| ||| || | ||| ||||| | ||||| ||||||||||||
Sbjct 52719 AGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 52660
Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC--TACTCTTTC--TCCATATAC-CTTGTTGC 11801
|| ||||| ||||| || ||||| ||||| || ||||| | | || | ||| | |
Sbjct 52659 AAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCC 52600
Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861
| | ||||| ||||||||| || ||||| ||||| || |||||| || || |
Sbjct 52599 TCG--ATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGG 52542
Query 11862 CGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919
|||| | | |||| | ||||| | |||| | || || || || | | |||
Sbjct 52541 CGTTGAAGAGAAATTC--CCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACT 52484
Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968
||||||||| ||||| || |||||||| || ||||| || |||||||||
Sbjct 52483 ATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAA 52435
>seq418289
Length=29330
Score = 134 bits (148), Expect = 1e-26
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|||||||| || || |||||||| |||||||| | |||||||||| |||||||||||
Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 26670 ACGACACGTTCTCC 26657
>seq400361
Length=55729
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| |
Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 38540 CCACCACCCTTTCCCC 38555
Score = 86.0 bits (94), Expect = 6e-12
Identities = 90/117 (77%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938
|||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| |
Sbjct 41895 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 41953
Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
||||| || |||||||| ||||||||||| || ||||||| | ||| || |||
Sbjct 41954 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 42010
>seq327453
Length=26950
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || || || ||||| ||||||||
Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||||| |||| || || ||||||||||| || || || || |
Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 17905 CTGTTTCTTATACCAT 17920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 466056587927360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |