Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq366024 354 8e-93 seq404197 264 1e-65 seq418289 134 1e-26 seq400361 120 3e-22 seq327453 96.9 3e-15 >seq366024 Length=42324 Score = 354 bits (392), Expect = 8e-93 Identities = 618/891 (69%), Gaps = 15/891 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| | |||| | ||||| || | |||| || | || | || |||||||| ||||| | Sbjct 18354 CACTCTCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTCCCTTCCA 18296 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| ||||| | ||| |||| || || | |||| | Sbjct 18295 GTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 18236 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| ||||| |||||||| || ||||| ||| ||| ||||||| Sbjct 18235 GCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCA 18176 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | ||| | || | ||||||| |||||| |||| |||| Sbjct 18175 TCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT 18116 Query 11568 CAATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACA 11624 | |||||| | | | ||| | || || ||| |||| | ||||| || | Sbjct 18115 TGACGATTATTTA---TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATA 18059 Query 11625 TTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684 | | || ||||| ||||| |||||||| |||||||| || || |||||||| ||||||| Sbjct 18058 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATG 17999 Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744 | | ||||| |||| ||||||||||| | ||| ||||| | ||||| |||||||||| Sbjct 17998 TGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 17939 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGC 11801 |||| ||||| ||||| || ||||| ||||| | | ||||||||| || ||| ||| Sbjct 17938 AGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGT 17879 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 ||||| ||||||||| || ||||| ||||| || |||||| || |||| Sbjct 17878 CCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAG 17819 Query 11862 CGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 |||| | | |||| | ||||| | |||| | | || || || || | | ||| Sbjct 17818 CGTTGAAGAGAAATTC--CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACT 17761 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||||| ||||| || |||||||| || ||| | || ||||||||||| || || || Sbjct 17760 ATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTC 17701 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | | ||| || || ||| ||| | || || |||||||| || |||||||| Sbjct 17700 CGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACT 17641 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099 | |||||| || || || ||||| || || ||| | || || | | || Sbjct 17640 TGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTC 17581 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 ||| | | | || || || | || || |||||| | |||||||| ||| | | Sbjct 17580 CCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGC 17521 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || |||||||| | ||| |||||||| || || ||||| || || || || Sbjct 17520 TTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 264 bits (292), Expect = 1e-65 Identities = 455/649 (70%), Gaps = 15/649 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| || | |||| || | || || || |||||||| ||||| | Sbjct 53077 CACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 53019 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| ||| |||||||||| ||| ||||| | ||| |||| || || | |||| | Sbjct 53018 GTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 52959 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| ||||| | ||||| || ||||| ||| ||| ||||||| Sbjct 52958 GCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCA 52899 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| | || | || | ||||||| |||||| |||| |||| Sbjct 52898 TCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 52839 Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | ||| || | || || | || || ||| |||| | ||||| ||||| Sbjct 52838 TGACGATAATTT-CTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATC 52780 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | | ||||| ||||| |||||||| |||||||| || || |||||||| |||||||| Sbjct 52779 AGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTG 52720 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | |||||||||| ||||| ||| || | ||| ||||| | ||||| |||||||||||| Sbjct 52719 AGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 52660 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC--TACTCTTTC--TCCATATAC-CTTGTTGC 11801 || ||||| ||||| || ||||| ||||| || ||||| | | || | ||| | | Sbjct 52659 AAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCC 52600 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 | | ||||| ||||||||| || ||||| ||||| || |||||| || || | Sbjct 52599 TCG--ATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGG 52542 Query 11862 CGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 |||| | | |||| | ||||| | |||| | || || || || | | ||| Sbjct 52541 CGTTGAAGAGAAATTC--CCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACT 52484 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 ||||||||| ||||| || |||||||| || ||||| || ||||||||| Sbjct 52483 ATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAA 52435 >seq418289 Length=29330 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | |||||||||| ||||||||||| Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 26670 ACGACACGTTCTCC 26657 >seq400361 Length=55729 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 38540 CCACCACCCTTTCCCC 38555 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 41895 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 41953 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 41954 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 42010 >seq327453 Length=26950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 17905 CTGTTTCTTATACCAT 17920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466056587927360