Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq397970 279 4e-70 seq397969 145 6e-30 seq273439 134 1e-26 seq408533 93.3 4e-14 seq372917 93.3 4e-14 seq317162 93.3 4e-14 seq344518 82.4 6e-11 >seq397970 Length=5258 Score = 279 bits (308), Expect = 4e-70 Identities = 473/680 (70%), Gaps = 9/680 (1%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| | |||| ||| || ||||| ||| || || ||||| ||||| Sbjct 2256 AGCTGAATTTTCAGCAGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2197 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || |||||||||||| ||| ||||||| || | ||||||||| Sbjct 2196 ACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCGATCATGTA-----GCAGGGCGTAG 2142 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| || || || || |||||||| || | ||||||||||||||||||||| Sbjct 2141 CTGGCGATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAG 2082 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||||| || ||||||| ||||| || | |||| || || || || ||||| Sbjct 2081 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATG 2022 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | ||| || || ||||| || |||| | ||| | | |||| || | Sbjct 2021 AGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTT 1962 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || ||| || ||| | |||| || || || || ||| | || | | || Sbjct 1961 TTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATCC 1902 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | |||| || ||||||||||| |||||||| || || || || || || | ||| Sbjct 1901 ATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCC 1842 Query 21333 CCCTC-GCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGT 21390 || || || ||| ||| ||| | || | |||| ||| | |||||||| | || | Sbjct 1841 CCTTCTGCTCTGGT-GGAGAATCCCAG-GCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 1784 Query 21391 CCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450 |||| ||||| || || | ||||| || | | || ||||| ||| ||||||||| Sbjct 1783 CCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACC 1724 Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACT 21510 |||||||||||||| || ||| | || || || | |||||| || | ||||||||| | Sbjct 1723 ACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATT 1664 Query 21511 CGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCC 21570 | || || ||| | || || ||||| | |||||||| ||| |||||| |||||| | Sbjct 1663 CATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGC 1604 Query 21571 TGTCCTCCCTCTGCACGCCG 21590 ||| ||| || | | |||| Sbjct 1603 GGTCATCCTTCCGAAAGCCG 1584 >seq397969 Length=7843 Score = 145 bits (160), Expect = 6e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 7714 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 7655 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||| ||||||||||||||||||| || Sbjct 7654 GCACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCA 7595 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || || || ||||| Sbjct 7594 CCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCAT 7552 >seq273439 Length=4507 Score = 134 bits (148), Expect = 1e-26 Identities = 124/156 (79%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||| || || ||||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 2398 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2339 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| || || || ||||| |||||||||| ||| || | || || |||||| | Sbjct 2338 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 2279 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 ||| | |||||||||||||||| |||||||||||| Sbjct 2278 GTCTCCTGACCTCTGGTACAGCT-GCAGGACAGCTC 2244 >seq408533 Length=33819 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 27085 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 27144 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | || || ||||| || || ||||| Sbjct 27145 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGATCGATTCTTCTCTGGAATGGAG 27204 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | | || | || | Sbjct 27205 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTGCTGAAGAAGTTGTG 27264 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 27265 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 27313 >seq372917 Length=39490 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || |||| || || ||||| | | Sbjct 28111 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGGTTCCTTGAGT 28052 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||||| | ||| || ||||| || || | ||| Sbjct 28051 TCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGGAAAGGAG 27992 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 || || || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 27991 AAGCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 27932 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 27931 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 27883 >seq317162 Length=29175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 3024 CTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAA 3083 |||| || | || ||||||||||||| | | ||| || ||||| || || ||||| | Sbjct 9461 CTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAGA 9402 Query 3084 ACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACG 3143 |||||||| | | |||||||| ||| ||||| || |||| | || || | || | | Sbjct 9401 ACCATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTACTGAAGAGGTTGTGG 9342 Query 3144 TCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTT 3203 ||||| | || |||||| | ||| || || || ||||| |||| ||||| | Sbjct 9341 TCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCT 9282 Query 3204 TACCAATTCCTAATTGTTC--ATCAACTGCAACGATGCAGTT 3243 | ||||| || | ||||| || |||||||||||||| Sbjct 9281 TGCCAATGCCCA--TGTTCTGGGACACAGCAACGATGCAGTT 9242 >seq344518 Length=1300 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| | ||||| || || ||||| | | Sbjct 789 TTTAATGCATCATCCAGACTTTTGGCAAGAAAAGGAGCTCCCTGTGGAGGTTCCTTGAGT 848 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTC----AGGGAT 3078 ||||| | | || ||||||||||||| | | ||| || ||||| || | | || Sbjct 849 TCTCTAATGAGAACTATATTAATTCTGTCCCTTAAAGGTCGATTCTTCTCTGGAATGAAT 908 Query 3079 GGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGT 3138 ||| ||||| ||| | | |||||||| |||| ||||| || |||| | | || | || Sbjct 909 GGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTGCTGAAGAGGT 968 Query 3139 AGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 | |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 969 TGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCAGGGGCCAGGGCA 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425578793277120