Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq366024 123 2e-23 seq404197 107 1e-18 >seq366024 Length=42324 Score = 123 bits (136), Expect = 2e-23 Identities = 373/565 (66%), Gaps = 37/565 (7%) Strand=Plus/Plus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | ||| |||||||| ||| | || Sbjct 17509 ATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGACCTTTCCAAGGAC 17568 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT---TCATGTCTCACATA 22461 | | || ||| ||| |||| || ||||| || | |||| || || || Sbjct 17569 ATTCAGCACTGG---GAAGCCCTGA---AGCCTGAGGAGAGATATTTCATTTCGCATATT 17622 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 ||||| ||||||||| ||| |||||||| ||| || ||| | ||| ||| ||| Sbjct 17623 CTGGCTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCAGTTT 17679 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || || ||| || | ||| | |||||| | ||||||||| || | | || || Sbjct 17680 AGCCAA-GAAGTTCAG---ATTACGGAAGCCCGTTGTTTCTATGGCTTCCTAATTGCCAT 17735 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| || ||| |||||||||||| || || ||| ||| | | |||||| Sbjct 17736 GGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACAT---TAAAGATTC 17792 Query 22636 --AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || ||| || | |||| || ||| ||||| ||||| || ||||| Sbjct 17793 CAAAGAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGC 17852 Query 22692 ACAGTGGGCTGCACAATGGCTGAATGCCACACATA-AGTCTATC---GCAACACGTCTCT 22747 | | ||||| | |||| || ||| | || ||| | | |||| || Sbjct 17853 AGATTGGGC----CTTGTGCTGGATCGGGGACAAAGAGGCTACGTATGGAGAACGTTTCG 17908 Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 | |||||||| || || ||||| || | |||||||| || ||||| | |||||||||| Sbjct 17909 TAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGC 17968 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | || ||||| || || || || | | |||||||| || | |||||| | |||| Sbjct 17969 TCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACG 18028 Query 22868 AAGGTCTACACTGTGACTTTGCTTG 22892 | ||| |||||||||||||||| || Sbjct 18029 AGGGTTTACACTGTGACTTTGCCTG 18053 >seq404197 Length=65104 Score = 107 bits (118), Expect = 1e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||| || | |||||||| || || ||||| || | |||||||| || ||||| | ||| Sbjct 52625 CGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATA 52684 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| |||||| | || ||||| || | | |||||||| || | |||||| Sbjct 52685 TTCTGGCTCAAGAAATGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGC 52744 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 | ||||| ||| |||||||||||||||| | || |||| | || || | ||||| Sbjct 52745 AGAGACGAGGGTTTACACTGTGACTTTGCCTTCCTGATGTTCAAACACCTGCTACACAAA 52804 Query 22921 CC 22922 || Sbjct 52805 CC 52806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354403859993932