Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq411564 95.1 1e-14 seq359707 84.2 2e-11 >seq411564 Length=61085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || | || ||| | || | ||| | ||||||||||| || ||||| ||||| Sbjct 40442 GCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 40501 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC--GGGA 139654 || |||| |||||| |||||||| || ||| |||| || | ||||| || ||| Sbjct 40502 AATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 40561 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||| || || ||| || || | | | | ||||| |||||||| Sbjct 40562 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCC 40621 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | |||||||| |||| || || |||| || |||||| Sbjct 40622 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCATA 40672 >seq359707 Length=5412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTC--ATTGTGCTCGAGTCTTCGAGCTGTTTAC 139625 ||||||||||| || ||| | ||||| | |||| | ||||| |||||||| | Sbjct 2596 GTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCA--TCTTCCAGCTGTTTGC 2653 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| |||| || | ||||| || || || ||||||||||| || ||| || | Sbjct 2654 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCT 2713 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | | | ||||| ||| ||||||||| | ||| | |||||||| ||||| | Sbjct 2714 TCACGTTCTTGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 2773 Query 139746 TTTTTACGAATATTTGCAT 139764 | || ||||| || ||||| Sbjct 2774 TCTTCACGAAGATCTGCAT 2792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493450710044800