Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 390 2e-103
seq404197 334 1e-86
seq418289 147 3e-30
seq327453 131 2e-25
seq265909 104 3e-17
seq400361 98.7 1e-15
>seq366024
Length=42324
Score = 390 bits (432), Expect = 2e-103
Identities = 621/890 (70%), Gaps = 3/890 (0%)
Strand=Plus/Minus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
||||| |||| ||| | || || || || || | || || | || ||||| || |||
Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|||| ||| ||||| ||||| || ||||| ||||| || | ||| || ||||
Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | ||| || || || ||||| || || ||||||| |||
Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || ||||| || || | || || || || ||||| || ||
Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120
Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
|||| || || || | || | | || ||| || | | ||||| ||
Sbjct 18119 GCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAT 18060
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||| || || || || ||||| | |||||||||||| ||||| ||||| ||||||||
Sbjct 18059 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 18000
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
||||| ||||| || || || || ||||| ||||| ||||| || ||||| || ||||||
Sbjct 17999 GTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 17940
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TG 50130
|||||||||||||| ||||| |||||||| || | | |||||||| | || ||
Sbjct 17939 AAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTG 17880
Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
|| ||||| |||||||| |||||||| |||||||||||||| || || ||
Sbjct 17879 TCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATA 17820
Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250
|| || |||||| | | |||| || |||||||| ||||| || || | ||||||
Sbjct 17819 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 17760
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
|||||||| ||||| |||||||| ||||| || | || || |||||||| | || ||
Sbjct 17759 TACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCC 17700
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
|||||||| |||||| | ||| | || | || |||||||| ||||| || |||||
Sbjct 17699 GTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 17640
Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430
|||||||| || |||| | ||| || |||| | | || | || | || | |
Sbjct 17639 GCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCC 17580
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
|| | | || || || || | || || ||||| |||||||||| || ||||| ||
Sbjct 17579 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCT 17520
Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|| |||||||| | ||| || ||||| |||| ||| || || || |||||
Sbjct 17519 TTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470
>seq404197
Length=65104
Score = 334 bits (370), Expect = 1e-86
Identities = 603/881 (68%), Gaps = 3/881 (0%)
Strand=Plus/Minus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
||||| |||||||| | || || || || || | || || || || ||||| || |||
Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|||| ||| |||| ||||| || ||||| ||||| || | ||| || ||||
Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | ||| || || | |||| || || ||||||| | |||
Sbjct 52962 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAA 52903
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || |||| | ||| | || || || || ||||| || ||
Sbjct 52902 TTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 52843
Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
|||| ||||| | | || | | || ||| || | | ||||| |||
Sbjct 52842 GCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 52783
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||| | || || || ||||| | |||||||||||| ||||| ||||| ||||||||
Sbjct 52782 ATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 52723
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
||||| |||||||| || || | || || ||||| ||||| || ||||| || ||||||
Sbjct 52722 GTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 52663
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TG 50130
|||||||||||||| |||||||||||||| || | | || || || || || ||
Sbjct 52662 AAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTG 52603
Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
|| | ||||| |||||||| |||||||| |||||||||||||| || || |||
Sbjct 52602 TCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATG 52543
Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250
|| || |||||| | | |||| || ||||| || ||||| || || | ||||||
Sbjct 52542 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTA 52483
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
|||||||||||||| |||||||| ||||| || || || || |||||| | || ||
Sbjct 52482 TACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCC 52423
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
|||||||| |||||| | || || || | | |||||||| |||| ||||||||
Sbjct 52422 GTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTT 52363
Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430
|||||| | || | || ||||| | |||| | | || | || | || | |
Sbjct 52362 GCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCC 52303
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
| | | || || || || | || || || || | ||||| || || ||||| ||
Sbjct 52302 CGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCG 52243
Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531
|| ||| |||| | ||| || ||| | ||| ||| || ||
Sbjct 52242 TTCTTACACATCTGCCAAATATCACGGTATCCGATAGGAAA 52202
>seq418289
Length=29330
Score = 147 bits (162), Expect = 3e-30
Identities = 107/124 (86%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || ||||
Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673
Query 50102 CAAC 50105
| ||
Sbjct 26672 CTAC 26669
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 24796 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 24737
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 24736 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 24691
>seq327453
Length=26950
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||||||||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 17905 CTGTTTCTTATACCATA 17921
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 26480 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 26539
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 26540 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 26599
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 26600 TCCAGGTAAATAGC 26613
Score = 93.3 bits (102), Expect = 6e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| |||||||| || || | || | ||| | |||||| || || || || ||||| |||
Sbjct 22132 TAGGTTTCATACGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAA 22191
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || |||| |||||| | || || || | || ||||| || ||
Sbjct 22192 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGTAC 22251
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475
| | |||||||| || ||||| | ||||| || ||||| || || || | |||
Sbjct 22252 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 22307
>seq265909
Length=7629
Score = 104 bits (114), Expect = 3e-17
Identities = 153/216 (71%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 47742 ATCTAGAGATTGTACTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 47801
||||| | ||| |||||||| | |||||| ||| |||| |||| | | || ||||| ||
Sbjct 2321 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 2262
Query 47802 TATTCTATCTCCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCC 47861
|||| ||| || | || || | ||| | ||| ||| ||||| || | || ||
Sbjct 2261 AATTCGATCATCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 2202
Query 47862 TATGTTTCCCCTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAG 47918
| |||| ||||||||||| ||||| |||||| |||||| ||| || | ||||
Sbjct 2201 AACACTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2142
Query 47919 TGACAGTCCAGACCTAGGAGCTATTCTACCATAGCA 47954
| || ||||| | ||||||| ||| ||||||||
Sbjct 2141 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCA 2106
>seq400361
Length=55729
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| || ||||| ||||| || || | || ||
Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 38541
Query 50104 AC 50105
||
Sbjct 38542 AC 38543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 714484924048160
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