Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq366024 340 2e-88 seq404197 226 3e-54 seq418289 120 3e-22 >seq366024 Length=42324 Score = 340 bits (376), Expect = 2e-88 Identities = 636/926 (69%), Gaps = 10/926 (1%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || | ||| | ||||| || | ||||| || ||| |||||||||| || ||| Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| |||||||| |||||||||||| | | || || || | || Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | ||| || || | || || || || || ||| ||| ||| Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || || || | || || | || || | |||||| || Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120 Query 13806 GCCT---CTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 || | | |||| || ||| | ||| | ||||| | | || ||||| Sbjct 18119 GCATTGACGATTATT-TATTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 18063 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||| Sbjct 18062 AATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 18003 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||||| | || || |||| ||||||||||| | ||| ||||| | ||||| || || Sbjct 18002 AATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCA 17943 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| ||||| || ||||||||||| |||| || ||||||||| ||| || | | Sbjct 17942 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCT 17883 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 |||| | ||||| ||||| || | || || || | | || |||||| ||| Sbjct 17882 TTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 17823 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 ||||| || || | | ||||| | ||||| | | | |||||| || ||||| || | Sbjct 17822 ATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 17763 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 |||||||||||||| || ||||||||||| || || | || ||||| || || | ||| Sbjct 17762 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCT 17703 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 |||| || ||||| | ||| || |||| |||||||| ||||| |||||| Sbjct 17702 TCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCA 17643 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 || |||||||| || |||| || | ||| || ||| ||| ||| || || | Sbjct 17642 CTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 17583 Query 14343 TTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 | ||| | | || | ||||| ||||| || || || ||| |||||||||| ||| | Sbjct 17582 TCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTC 17524 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGA 14461 |||||| |||||||| ||| || || | ||| |||||||| | ||||| | | Sbjct 17523 AGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGC-GGC 17465 Query 14462 AGATG-TTTCTTTAAGAATTGGTTCC 14486 | || ||||||| |||| ||||||| Sbjct 17464 GGGTGTTTTCTTTCAGAAGTGGTTCC 17439 >seq404197 Length=65104 Score = 226 bits (250), Expect = 3e-54 Identities = 488/727 (67%), Gaps = 2/727 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| |||| |||||||| |||||||||||| | | || || || | || Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | | ||| || || | || | || || || ||| ||| | ||| Sbjct 52962 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAA 52903 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || || | | || | || || | |||||| || Sbjct 52902 TTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 52843 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || | ||||| | | | ||| | ||||| | | || ||||| || Sbjct 52842 GCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 52783 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || | | ||||| ||||| || | ||||| ||||| ||||||||||| || |||||| Sbjct 52782 ATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 52723 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || | || ||||||| ||||| ||| || | ||| ||||| | ||||| || || ||| Sbjct 52722 GTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 52663 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| ||||| || ||||| ||||| |||| | || | || || || | |||| Sbjct 52662 AAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTG 52603 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | | ||||| ||||| || | || || || | | || |||||| ||||| Sbjct 52602 TCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATG 52543 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCT 14164 || || || | | ||||| | ||||| | | |||| |||||| || ||||| || | || Sbjct 52542 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTG-AATGTAAGTGTCAATGAGGAGACT 52484 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||| || |||||||||||||| || || || || ||||| || | ||||| Sbjct 52483 ATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTC 52424 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 || || ||||| | || | || ||| |||||||| |||| || ||||| Sbjct 52423 CGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACT 52364 Query 14285 AGCTGCA 14291 |||||| Sbjct 52363 TGCTGCA 52357 >seq418289 Length=29330 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 26672 CTACGACACGTTCTCC 26657 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 28473 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 28414 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| ||||| || |||||||||||| Sbjct 28413 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 28378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477200768909600