Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 298 5e-76
seq404197 197 1e-45
seq418289 114 1e-20
>seq366024
Length=42324
Score = 298 bits (330), Expect = 5e-76
Identities = 627/927 (68%), Gaps = 12/927 (1%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || | ||| | ||||| || | ||||| || ||| | |||||||| || |||
Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||||||| ||||| |||||||| || ||||||||| | | || || || | ||
Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
|| || || | | ||| || || | || || || || || ||| ||| |||
Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || || || || || | || || | || || | |||||| ||
Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120
Query 13594 GCCT---CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650
|| | || |||| | || | | | | | | ||||| | | || |||||
Sbjct 18119 GCATTGACGATTAT--TTATTTGACTC-TCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 18063
Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710
|| || | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||
Sbjct 18062 AATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 18003
Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770
||||| | || || |||| ||||||||||| | ||| ||||| | || || || ||
Sbjct 18002 AATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCA 17943
Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830
|||||||| ||||| || ||||||||||| |||| | ||||||||| ||| || | |
Sbjct 17942 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCT 17883
Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890
|||| ||||| ||||| || | || || || | | || |||||| ||
Sbjct 17882 TTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 17823
Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950
|| || ||||| | | |||| | ||||| | | | |||||| || ||||| || |
Sbjct 17822 ATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 17763
Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010
|||||||||||||| || |||||||| || || || | || ||||| ||||| | |||
Sbjct 17762 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCT 17703
Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070
|| | || || || | ||| || ||||||||||||| || || ||||||
Sbjct 17702 TCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCA 17643
Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130
|| |||||||| || |||| || | ||| || ||| ||| ||| || || |
Sbjct 17642 CTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 17583
Query 14131 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188
| ||| | ||| || ||||| ||||| || || || ||| |||||||||| |||
Sbjct 17582 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 17525
Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14248
||||||| |||||||| ||| || || | ||| |||||||| | ||||| | |
Sbjct 17524 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGC-GG 17466
Query 14249 AAGATG-TTTCTTTAAGAATTGGCTCC 14274
| || ||||||| |||| ||| |||
Sbjct 17465 CGGGTGTTTTCTTTCAGAAGTGGTTCC 17439
>seq404197
Length=65104
Score = 197 bits (218), Expect = 1e-45
Identities = 559/854 (65%), Gaps = 6/854 (1%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || ||||| | ||||| || | ||||| || ||||| |||||||| || |||
Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||||||| |||| |||||||| || ||||||||| | | || || || | ||
Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
|| || || | | | ||| || || | || | || || || ||| ||| | |||
Sbjct 52962 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAA 52903
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || || || || | | || | || || | |||||| ||
Sbjct 52902 TTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 52843
Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653
|| | | ||||| || | | | | ||||| | | || ||||| ||
Sbjct 52842 GCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 52783
Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713
|| | | ||||| ||||| || | ||||| ||||| ||||||||||| || ||||||
Sbjct 52782 ATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 52723
Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773
|| | || ||||||| ||||| ||| || | ||| ||||| | || || || || |||
Sbjct 52722 GTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 52663
Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833
||||| ||||| || ||||| ||||| |||| | || | || || || | ||||
Sbjct 52662 AAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTG 52603
Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893
| ||||| ||||| || | || || || | | || |||||| || ||
Sbjct 52602 TCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATG 52543
Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCT 13952
|| ||||| | | |||| | ||||| | | |||| |||||| || ||||| || | ||
Sbjct 52542 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTG-AATGTAAGTGTCAATGAGGAGACT 52484
Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012
||||||||| || ||||||||||| || || || || || ||||| ||| | |||||
Sbjct 52483 ATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTC 52424
Query 14013 TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072
| || || || | || | || ||| ||||||||| || | || |||||
Sbjct 52423 CGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACT 52364
Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14132
|||||| | || | || | | | | || ||| ||| ||| || || ||
Sbjct 52363 TGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTC 52304
Query 14133 CCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190
|| | ||| || ||||| ||||| || || || ||| | ||||| || ||| ||
Sbjct 52303 CCGGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCA 52246
Query 14191 GCTTTTTTATACAT 14204
|| || ||| ||||
Sbjct 52245 GCGTTCTTACACAT 52232
>seq418289
Length=29330
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||
Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| |
Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 26672 CTACGACACGTTCTCC 26657
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || ||||| | ||||| || | ||||| || ||||| |||||||| || |||
Sbjct 28473 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 28414
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
|||||||| ||||| ||||| || || |||||||||
Sbjct 28413 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 28378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476067570272160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |