Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq366024 298 5e-76 seq404197 197 1e-45 seq418289 114 1e-20 >seq366024 Length=42324 Score = 298 bits (330), Expect = 5e-76 Identities = 627/927 (68%), Gaps = 12/927 (1%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || | ||| | ||||| || | ||||| || ||| | |||||||| || ||| Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| |||||||| || ||||||||| | | || || || | || Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | ||| || || | || || || || || ||| ||| ||| Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || || || | || || | || || | |||||| || Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120 Query 13594 GCCT---CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650 || | || |||| | || | | | | | | ||||| | | || ||||| Sbjct 18119 GCATTGACGATTAT--TTATTTGACTC-TCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 18063 Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 || || | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||| Sbjct 18062 AATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 18003 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 ||||| | || || |||| ||||||||||| | ||| ||||| | || || || || Sbjct 18002 AATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCA 17943 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 |||||||| ||||| || ||||||||||| |||| | ||||||||| ||| || | | Sbjct 17942 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCT 17883 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 |||| ||||| ||||| || | || || || | | || |||||| || Sbjct 17882 TTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 17823 Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950 || || ||||| | | |||| | ||||| | | | |||||| || ||||| || | Sbjct 17822 ATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 17763 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||||||||||| || |||||||| || || || | || ||||| ||||| | ||| Sbjct 17762 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCT 17703 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || | || || || | ||| || ||||||||||||| || || |||||| Sbjct 17702 TCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCA 17643 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || |||||||| || |||| || | ||| || ||| ||| ||| || || | Sbjct 17642 CTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 17583 Query 14131 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 | ||| | ||| || ||||| ||||| || || || ||| |||||||||| ||| Sbjct 17582 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 17525 Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14248 ||||||| |||||||| ||| || || | ||| |||||||| | ||||| | | Sbjct 17524 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGC-GG 17466 Query 14249 AAGATG-TTTCTTTAAGAATTGGCTCC 14274 | || ||||||| |||| ||| ||| Sbjct 17465 CGGGTGTTTTCTTTCAGAAGTGGTTCC 17439 >seq404197 Length=65104 Score = 197 bits (218), Expect = 1e-45 Identities = 559/854 (65%), Gaps = 6/854 (1%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| |||| |||||||| || ||||||||| | | || || || | || Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | | ||| || || | || | || || || ||| ||| | ||| Sbjct 52962 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAA 52903 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || || | | || | || || | |||||| || Sbjct 52902 TTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 52843 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | ||||| || | | | | ||||| | | || ||||| || Sbjct 52842 GCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 52783 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || | | ||||| ||||| || | ||||| ||||| ||||||||||| || |||||| Sbjct 52782 ATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 52723 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || | || ||||||| ||||| ||| || | ||| ||||| | || || || || ||| Sbjct 52722 GTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 52663 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| ||||| || ||||| ||||| |||| | || | || || || | |||| Sbjct 52662 AAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTG 52603 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 | ||||| ||||| || | || || || | | || |||||| || || Sbjct 52602 TCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATG 52543 Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCT 13952 || ||||| | | |||| | ||||| | | |||| |||||| || ||||| || | || Sbjct 52542 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTG-AATGTAAGTGTCAATGAGGAGACT 52484 Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||||||||| || ||||||||||| || || || || || ||||| ||| | ||||| Sbjct 52483 ATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTC 52424 Query 14013 TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 | || || || | || | || ||| ||||||||| || | || ||||| Sbjct 52423 CGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACT 52364 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14132 |||||| | || | || | | | | || ||| ||| ||| || || || Sbjct 52363 TGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTC 52304 Query 14133 CCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 || | ||| || ||||| ||||| || || || ||| | ||||| || ||| || Sbjct 52303 CCGGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCA 52246 Query 14191 GCTTTTTTATACAT 14204 || || ||| |||| Sbjct 52245 GCGTTCTTACACAT 52232 >seq418289 Length=29330 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 26672 CTACGACACGTTCTCC 26657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 28473 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 28414 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| ||||| || || ||||||||| Sbjct 28413 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 28378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476067570272160