Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq366024 372 4e-98 seq404197 318 8e-82 seq327453 141 1e-28 seq418289 132 6e-26 seq400361 107 3e-18 seq346476 87.8 2e-12 seq265909 86.0 8e-12 >seq366024 Length=42324 Score = 372 bits (412), Expect = 4e-98 Identities = 643/933 (69%), Gaps = 6/933 (1%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | ||| ||| ||| || ||||| |||| ||| | Sbjct 18402 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCAGACTGGACATCACTCTCATCCT 18343 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || | || || | || |||||||| ||||||| ||| ||||| || Sbjct 18342 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 18283 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 18282 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAAG 18223 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| ||||| | |||||| || || ||||||| |||||||| || || || || Sbjct 18222 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 18163 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 ||||| || || | || || || || ||||| || || || | || || | Sbjct 18162 CACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 18103 Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 | | ||| | | || ||| | | | ||||| || |||| || || || || Sbjct 18102 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAGTC 18043 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 ||||| | |||||| ||||| ||||| | ||| |||||||| ||||| ||||| || || Sbjct 18042 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTATCAG 17983 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || || ||||| ||||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 17982 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 17923 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTG 42252 ||| |||||||| | | | |||||||| | | | |||| ||||| Sbjct 17922 TGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAA 17863 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 |||||||| |||||||| |||||||||||||| || || || || || |||||| | | Sbjct 17862 GGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTC 17803 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| || |||||||| || || || || | |||||||||||||| ||||| || Sbjct 17802 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGAT 17743 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||| ||||| || | || || |||||||| | ||| || |||| ||| |||||| Sbjct 17742 GTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 17683 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | ||| | || | || ||||| || ||||| || ||||| |||||||| || |||| Sbjct 17682 GCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 17623 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 | ||| || |||||| | || || || | | | ||| | | || || || Sbjct 17622 AATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 17563 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 || | || || ||||| | |||||||| || || || || || |||||||| | ||| Sbjct 17562 GGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 17503 Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||||| |||| || || || || ||||| Sbjct 17502 AATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 318 bits (352), Expect = 8e-82 Identities = 619/913 (68%), Gaps = 6/913 (1%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| | Sbjct 53125 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 53066 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || | || || || || |||||||| ||||||| ||| |||| || Sbjct 53065 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATTCTC 53006 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 53005 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 52946 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| ||||| | ||||| || || ||||||| | |||||||| || || || || Sbjct 52945 TCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAGCTT 52886 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 |||| | ||| | || || || || ||||| || || || | ||||| Sbjct 52885 CACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATAATTTC 52826 Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 | | ||| | | || ||| | | | ||||| ||||||| | || || || Sbjct 52825 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAAGTC 52766 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 ||||| | |||||| ||||| ||||| | ||| |||||||| ||||| |||||||| || Sbjct 52765 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 52706 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || | || || ||||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 52705 TCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 52646 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTG 42252 ||| |||||||| | | | || || || | || |||| | ||||| Sbjct 52645 TGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATCCAGCGCAA 52586 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 |||||||| |||||||| |||||||||||||| || || ||||| || |||||| | | Sbjct 52585 GGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTC 52526 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| || ||||| || || || || || | |||||||||||||| ||||| || Sbjct 52525 CCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTAT 52466 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||| ||||| || || || || |||||| | ||| || |||| ||| |||||| Sbjct 52465 GTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTG 52406 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | || || || | | ||||| || |||| |||||||| |||||| | || | || Sbjct 52405 GCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAG 52346 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 ||||| | |||||| | || || || | | | || | | || || || Sbjct 52345 GACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCTT 52286 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 || | || || || || ||||||| || || || || || || ||| |||| | ||| Sbjct 52285 GGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCA 52226 Query 42613 GATATCATGATAT 42625 |||||| | ||| Sbjct 52225 AATATCACGGTAT 52213 >seq327453 Length=26950 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | | Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 17905 CTGTTTCTTATACCAT 17920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || || || || | | | ||| |||||||| || || || || ||||||| Sbjct 22130 CATAGGTTTCATACGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 22189 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || ||||| || ||||| || | Sbjct 22190 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 22249 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 | | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 22250 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 22301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 26480 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 26539 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 26540 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 26599 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 26600 TCCAGGTAAATAGC 26613 >seq418289 Length=29330 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673 Query 42207 C 42207 | Sbjct 26672 C 26672 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 24796 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 24737 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| || |||| ||| |||||| Sbjct 24736 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 24691 >seq400361 Length=55729 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 38540 >seq346476 Length=8320 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || ||||| || || |||||||| || ||||| || || ||| Sbjct 4620 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 4679 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || |||||||| | || ||||| || || || || || | || | ||| ||| Sbjct 4680 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 4739 Query 72538 ATATGCTGAGGTCTTTCA 72555 |||||||| ||||||||| Sbjct 4740 ATATGCTGTGGTCTTTCA 4757 >seq265909 Length=7629 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 39837 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 39896 ||||| | ||| ||||| || | |||||| ||| |||| |||| | | || ||||| || Sbjct 2321 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 2262 Query 39897 TATTCTATCTCCCGTATTTACATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCC 39956 |||| ||| || | || || | || | ||| ||| ||||| || | || || Sbjct 2261 AATTCGATCATCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 2202 Query 39957 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAG 40013 | |||| ||||||||||| ||||| ||||| |||||| ||| || |||| Sbjct 2201 AACACTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2142 Query 40014 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 40049 | || ||||| | ||||||| ||| |||||||| Sbjct 2141 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667603605137440