Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq397970 178 2e-39 seq366024 176 7e-39 seq404197 159 5e-34 seq273439 86.0 9e-12 >seq397970 Length=5258 Score = 178 bits (196), Expect = 2e-39 Identities = 486/736 (66%), Gaps = 15/736 (2%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || |||||| || |||||| | ||||| | Sbjct 1669 CCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTGCTGTGGTTT 1728 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| || || || || |||||| ||||| || | || ||| | | Sbjct 1729 ATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCC 1788 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 || | ||| | | ||||| || || ||| || |||| ||| || ||| | Sbjct 1789 AATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAAGGGGATTTA 1848 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135 || ||||| || || || ||||||||||| | || || | || ||| || || Sbjct 1849 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGATATGGATTCA 1908 Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195 || ||||| | ||| || || |||||| |||| | | | | |||||| |||| ||||| Sbjct 1909 GATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATCAAAACCAAC 1968 Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 || || || || ||| | |||| | |||||||| |||| | | | ||||| Sbjct 1969 CCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATGGCC 2028 Query 70256 CTACCACCGTGTCACTGT-TTGGCTCAGTTTTAC-TCGT--ACGATGGCAAATTGTCATG 70311 ||||| ||||| ||| || || ||||| ||| | || ||| || | |||| || Sbjct 2029 CTACCCCCGTGCCACGCCCTTTGC-CAGTTCTACGTGGTGAACGGTG---AGCTGTCCTG 2084 Query 70312 CTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTA 70371 | |||| |||||| | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 2085 CCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTA 2144 Query 70372 TTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACA 70431 | || | ||||||| || ||||| || |||||||| | || || ||||| Sbjct 2145 CGCCCTGCT-----ACATGATCGCACACATCACGGGCCTGAAGCCAGGTGACTTTGTACA 2199 Query 70432 CACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGA 70491 ||| | || || || ||| | || | |||||||| |||| | || | || || | Sbjct 2200 CACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCTGCTGAAAATTCAGCTTCA 2259 Query 70492 ACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCT-CGTAAAGTTGAAAATATTGACA 70550 || || || || ||||| |||||||| || | || || |||||||| || ||||| Sbjct 2260 GCGAGAACCAAGGCCTTTCCCCAAGCTC-AGAATCCTTCGAAAAGTTGAGAAAATTGATG 2318 Query 70551 GTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGG 70610 || ||| ||||| ||| || |||| ||| |||| |||| | ||| |||| Sbjct 2319 ACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAAATGG 2378 Query 70611 TTCTGGCTGTTTAGAG 70626 ||||||||||||| Sbjct 2379 AAATGGCTGTTTAGAG 2394 >seq366024 Length=42324 Score = 176 bits (194), Expect = 7e-39 Identities = 572/878 (65%), Gaps = 24/878 (3%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| || ||||| |||||| | ||||| || || ||| |||| ||||||||| Sbjct 17479 TTTCCTATCAAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGG 17538 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | |||||||| || || ||||||||| | | | ||||| | | | |||| Sbjct 17539 ACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAG 17598 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | || || ||||| ||| |||| |||||||| | ||||| || || Sbjct 17599 ---GAGAGATATTTCATTTCGCATATTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTA 17655 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || | || ||||| ||| | ||| | || | || || Sbjct 17656 AATGAAAACTTGGTGGAGCAGTTTAGCCAAGAAGTTCAG-ATTACGGAAGCCCGTTGTTT 17714 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||| ||| || || ||| | || || |||||||| | || ||||| Sbjct 17715 CTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGA 17774 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || |||||| ||| | ||| | || || ||||| ||||| || || || ||| Sbjct 17775 CACTTACATTAAAGATTC-CAAAGAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGC 17833 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | || || ||||| | |||| | | ||||||| ||| | || || ||| Sbjct 17834 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAGGCTACGT 17893 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || || || || || || || ||||||||||| ||| ||||| Sbjct 17894 ATGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTG 17953 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----AAC 125531 | | || || |||||||| || || || || || ||||| || |||| | || Sbjct 17954 CATCGATATTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCT----CACATTTTCCAAT 18009 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 || |||| |||||||||| ||||||||||||||||| | | ||| | ||| Sbjct 18010 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC-TGC--CTGATATTCAAA 18066 Query 125592 TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCC 125651 | |||| | | | | | | | | || | |||| | || | | |||| Sbjct 18067 CACCTGCTACACAA----ACCTTCGGAGCAGAGA--GTCAAATAAATAATCGTCAATGCA 18120 Query 125652 GTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAAC 125711 || || |||||||| ||||| || || || |||| || || | | ||||| ||||| Sbjct 18121 GTTAGAATAGAACAGGAGTTCCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAAT 18180 Query 125712 TGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT 125771 |||| | ||| ||||||| || || |||||||| | || || ||| || | Sbjct 18181 TGCACTTTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGT 18240 Query 125772 GGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 ||||| ||| || | | ||||| ||||| || ||| | || ||||| || Sbjct 18241 TTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAA 18300 Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || ||||| ||||| | ||||||| || ||||||| Sbjct 18301 GGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTA 18338 >seq404197 Length=65104 Score = 159 bits (176), Expect = 5e-34 Identities = 572/882 (65%), Gaps = 32/882 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| | || | ||| |||||| | |||| || || ||| |||| ||||| ||| Sbjct 52202 TTTCCTATCGGATACCGTGATATTTGGCAGATGTGTAAGAACGCTGAGGCTTCCTTCTGG 52261 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| || ||||| || || ||||||||| | | | |||| | | | |||| Sbjct 52262 ACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAG 52321 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | || | ||||| | || | |||| ||| | || || | || Sbjct 52322 ---GAGAGATATTTCACTTCGCATGTCCTGCCTTTCTCTGCAGCAAGTGACGGCGTAGTA 52378 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || ||| || || | ||||| ||| | ||| | || | | || Sbjct 52379 AATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGTTCAG-ATTACGGAAGCCCATTATTT 52437 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || ||||||||| || || ||| | || ||||||||||| | || ||||| Sbjct 52438 CTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAAATGTATAGTCTCCTCATTGA 52497 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||||| ||| | ||| | || || ||||| ||||| || || || ||| Sbjct 52498 CACTTACATTCAAGATTC-CAAAGAAAGGGAATTTCTCTTCAACGCCATTGAGACAATGC 52556 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | || || ||||| | |||| | || |||||||| ||| | || || || Sbjct 52557 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACAAAGAGGCTAGGT 52616 Query 125416 ACGCCGACAGACTG--GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 || || || || || || || ||||| || || || ||||||||||| ||| ||| Sbjct 52617 ACT--GAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTT 52674 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----A 125529 ||| | || || ||||||||||| | ||||| |||||||| || |||| | | Sbjct 52675 TGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCCGGCCT----CACATTTTCCA 52730 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 | || |||| |||||||||| ||||||||||||||||| | || |||| || Sbjct 52731 ATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTTCCTGATGTT---CA 52787 Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 | | |||| | | | | | | | | || | |||| | ||| | | ||| Sbjct 52788 AACACCTGCTACACAA----ACCTTCGGAGCAGAGA--GTCAAAGAAATTATCGTCAATG 52841 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 | || ||||||||||| ||||| || || || ||| | || | | ||||| |||| Sbjct 52842 CAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTGAAGCTCATTGGGATGA 52901 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 | ||| | ||| ||||||| | || ||||||| | || || ||| || Sbjct 52902 ATTGCGCTTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGAGCTGG 52961 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA--TCACT 125827 | ||||| ||| || | | ||||| ||||| || ||| || ||| ||||| Sbjct 52962 GTTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATG--GAGAATAGTTCACT 53019 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || || ||||| ||||| || ||||||| || ||||||| Sbjct 53020 GGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 53061 >seq273439 Length=4507 Score = 86.0 bits (94), Expect = 9e-12 Identities = 211/319 (66%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 70317 TGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTA 70376 |||| |||||| | |||| |||||| ||||| |||| ||| | || |||||| | Sbjct 2259 TGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACGTCGCCAGCTATGCCC 2318 Query 70377 TGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCA 70436 || | || ||||||| || ||||| || |||||||| | || | |||||||| Sbjct 2319 TGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGTGACTCTGTACACACTT 2378 Query 70437 TTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGG 70496 | || || || ||| | || | ||||||| |||| | || |||| || | | | Sbjct 2379 TGGGAGATGCACACATTTACCTGGATCACATTGAGCTGCTGAAAATGCAGCTTCAGGGAG 2438 Query 70497 AGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATAT---TGACAGTT 70553 | || || ||||| || ||||| | | | | |||||||| || || |||| | Sbjct 2439 AACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAGAAAATCTATGAC---T 2495 Query 70554 TTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTC 70613 | ||| ||||| ||| || |||| ||| ||| | || | ||| |||| Sbjct 2496 TCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACTATTAAAATGGAAA 2555 Query 70614 TGGCTGTTTAGAGAGATAT 70632 ||||||||||||| | ||| Sbjct 2556 TGGCTGTTTAGAGTGCTAT 2574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737155263081440