Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 178 2e-39
seq366024 176 7e-39
seq404197 159 5e-34
seq273439 86.0 9e-12
>seq397970
Length=5258
Score = 178 bits (196), Expect = 2e-39
Identities = 486/736 (66%), Gaps = 15/736 (2%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955
|||||| |||| ||||| ||| || |||||| || |||||| | ||||| |
Sbjct 1669 CCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTGCTGTGGTTT 1728
Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015
|| ||||| || || || || |||||| ||||| || | || ||| | |
Sbjct 1729 ATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCC 1788
Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075
|| | ||| | | ||||| || || ||| || |||| ||| || ||| |
Sbjct 1789 AATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAAGGGGATTTA 1848
Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135
|| ||||| || || || ||||||||||| | || || | || ||| || ||
Sbjct 1849 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGATATGGATTCA 1908
Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195
|| ||||| | ||| || || |||||| |||| | | | | |||||| |||| |||||
Sbjct 1909 GATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATCAAAACCAAC 1968
Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255
|| || || || ||| | |||| | |||||||| |||| | | | |||||
Sbjct 1969 CCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATGGCC 2028
Query 70256 CTACCACCGTGTCACTGT-TTGGCTCAGTTTTAC-TCGT--ACGATGGCAAATTGTCATG 70311
||||| ||||| ||| || || ||||| ||| | || ||| || | |||| ||
Sbjct 2029 CTACCCCCGTGCCACGCCCTTTGC-CAGTTCTACGTGGTGAACGGTG---AGCTGTCCTG 2084
Query 70312 CTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTA 70371
| |||| |||||| | || |||||||| ||||| ||||| ||||| || |||||
Sbjct 2085 CCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTA 2144
Query 70372 TTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACA 70431
| || | ||||||| || ||||| || |||||||| | || || |||||
Sbjct 2145 CGCCCTGCT-----ACATGATCGCACACATCACGGGCCTGAAGCCAGGTGACTTTGTACA 2199
Query 70432 CACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGA 70491
||| | || || || ||| | || | |||||||| |||| | || | || || |
Sbjct 2200 CACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCTGCTGAAAATTCAGCTTCA 2259
Query 70492 ACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCT-CGTAAAGTTGAAAATATTGACA 70550
|| || || || ||||| |||||||| || | || || |||||||| || |||||
Sbjct 2260 GCGAGAACCAAGGCCTTTCCCCAAGCTC-AGAATCCTTCGAAAAGTTGAGAAAATTGATG 2318
Query 70551 GTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGG 70610
|| ||| ||||| ||| || |||| ||| |||| |||| | ||| ||||
Sbjct 2319 ACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAAATGG 2378
Query 70611 TTCTGGCTGTTTAGAG 70626
|||||||||||||
Sbjct 2379 AAATGGCTGTTTAGAG 2394
>seq366024
Length=42324
Score = 176 bits (194), Expect = 7e-39
Identities = 572/878 (65%), Gaps = 24/878 (3%)
Strand=Plus/Plus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||| |||| || ||||| |||||| | ||||| || || ||| |||| |||||||||
Sbjct 17479 TTTCCTATCAAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGG 17538
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|| | |||||||| || || ||||||||| | | | ||||| | | | ||||
Sbjct 17539 ACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAG 17598
Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177
||| || | || || ||||| ||| |||| |||||||| | ||||| || ||
Sbjct 17599 ---GAGAGATATTTCATTTCGCATATTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTA 17655
Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236
|| || || || || | || ||||| ||| | ||| | || | || ||
Sbjct 17656 AATGAAAACTTGGTGGAGCAGTTTAGCCAAGAAGTTCAG-ATTACGGAAGCCCGTTGTTT 17714
Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296
|| || |||| ||| || || ||| | || || |||||||| | || |||||
Sbjct 17715 CTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGA 17774
Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355
|| |||||| ||| | ||| | || || ||||| ||||| || || || |||
Sbjct 17775 CACTTACATTAAAGATTC-CAAAGAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGC 17833
Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415
| | | || || ||||| | |||| | | ||||||| ||| | || || |||
Sbjct 17834 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAGGCTACGT 17893
Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475
| | || | | || || || || || || || || ||||||||||| ||| |||||
Sbjct 17894 ATGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTG 17953
Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----AAC 125531
| | || || |||||||| || || || || || ||||| || |||| | ||
Sbjct 17954 CATCGATATTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCT----CACATTTTCCAAT 18009
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591
|| |||| |||||||||| ||||||||||||||||| | | ||| | |||
Sbjct 18010 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC-TGC--CTGATATTCAAA 18066
Query 125592 TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCC 125651
| |||| | | | | | | | | || | |||| | || | | ||||
Sbjct 18067 CACCTGCTACACAA----ACCTTCGGAGCAGAGA--GTCAAATAAATAATCGTCAATGCA 18120
Query 125652 GTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAAC 125711
|| || |||||||| ||||| || || || |||| || || | | ||||| |||||
Sbjct 18121 GTTAGAATAGAACAGGAGTTCCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAAT 18180
Query 125712 TGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT 125771
|||| | ||| ||||||| || || |||||||| | || || ||| || |
Sbjct 18181 TGCACTTTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGT 18240
Query 125772 GGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831
||||| ||| || | | ||||| ||||| || ||| | || ||||| ||
Sbjct 18241 TTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAA 18300
Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
|| ||||| ||||| | ||||||| || |||||||
Sbjct 18301 GGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTA 18338
>seq404197
Length=65104
Score = 159 bits (176), Expect = 5e-34
Identities = 572/882 (65%), Gaps = 32/882 (4%)
Strand=Plus/Plus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||| ||| | || | ||| |||||| | |||| || || ||| |||| ||||| |||
Sbjct 52202 TTTCCTATCGGATACCGTGATATTTGGCAGATGTGTAAGAACGCTGAGGCTTCCTTCTGG 52261
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|||| || ||||| || || ||||||||| | | | |||| | | | ||||
Sbjct 52262 ACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAG 52321
Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177
||| || | || | ||||| | || | |||| ||| | || || | ||
Sbjct 52322 ---GAGAGATATTTCACTTCGCATGTCCTGCCTTTCTCTGCAGCAAGTGACGGCGTAGTA 52378
Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236
|| || || ||| || || | ||||| ||| | ||| | || | | ||
Sbjct 52379 AATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGTTCAG-ATTACGGAAGCCCATTATTT 52437
Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296
|| || ||||||||| || || ||| | || ||||||||||| | || |||||
Sbjct 52438 CTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAAATGTATAGTCTCCTCATTGA 52497
Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355
|| ||||||| ||| | ||| | || || ||||| ||||| || || || |||
Sbjct 52498 CACTTACATTCAAGATTC-CAAAGAAAGGGAATTTCTCTTCAACGCCATTGAGACAATGC 52556
Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415
| | | || || ||||| | |||| | || |||||||| ||| | || || ||
Sbjct 52557 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACAAAGAGGCTAGGT 52616
Query 125416 ACGCCGACAGACTG--GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473
|| || || || || || || ||||| || || || ||||||||||| ||| |||
Sbjct 52617 ACT--GAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTT 52674
Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----A 125529
||| | || || ||||||||||| | ||||| |||||||| || |||| | |
Sbjct 52675 TGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCCGGCCT----CACATTTTCCA 52730
Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589
| || |||| |||||||||| ||||||||||||||||| | || |||| ||
Sbjct 52731 ATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTTCCTGATGTT---CA 52787
Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649
| | |||| | | | | | | | | || | |||| | ||| | | |||
Sbjct 52788 AACACCTGCTACACAA----ACCTTCGGAGCAGAGA--GTCAAAGAAATTATCGTCAATG 52841
Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709
| || ||||||||||| ||||| || || || ||| | || | | ||||| ||||
Sbjct 52842 CAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTGAAGCTCATTGGGATGA 52901
Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769
| ||| | ||| ||||||| | || ||||||| | || || ||| ||
Sbjct 52902 ATTGCGCTTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGAGCTGG 52961
Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA--TCACT 125827
| ||||| ||| || | | ||||| ||||| || ||| || ||| |||||
Sbjct 52962 GTTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATG--GAGAATAGTTCACT 53019
Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
|| || ||||| ||||| || ||||||| || |||||||
Sbjct 53020 GGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 53061
>seq273439
Length=4507
Score = 86.0 bits (94), Expect = 9e-12
Identities = 211/319 (66%), Gaps = 6/319 (2%)
Strand=Plus/Plus
Query 70317 TGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTA 70376
|||| |||||| | |||| |||||| ||||| |||| ||| | || |||||| |
Sbjct 2259 TGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACGTCGCCAGCTATGCCC 2318
Query 70377 TGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCA 70436
|| | || ||||||| || ||||| || |||||||| | || | ||||||||
Sbjct 2319 TGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGTGACTCTGTACACACTT 2378
Query 70437 TTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGG 70496
| || || || ||| | || | ||||||| |||| | || |||| || | | |
Sbjct 2379 TGGGAGATGCACACATTTACCTGGATCACATTGAGCTGCTGAAAATGCAGCTTCAGGGAG 2438
Query 70497 AGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATAT---TGACAGTT 70553
| || || ||||| || ||||| | | | | |||||||| || || |||| |
Sbjct 2439 AACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAGAAAATCTATGAC---T 2495
Query 70554 TTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTC 70613
| ||| ||||| ||| || |||| ||| ||| | || | ||| ||||
Sbjct 2496 TCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACTATTAAAATGGAAA 2555
Query 70614 TGGCTGTTTAGAGAGATAT 70632
||||||||||||| | |||
Sbjct 2556 TGGCTGTTTAGAGTGCTAT 2574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 737155263081440
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