Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq366024 282 4e-71 seq404197 217 1e-51 seq400361 114 1e-20 seq418289 105 6e-18 >seq366024 Length=42324 Score = 282 bits (312), Expect = 4e-71 Identities = 587/871 (67%), Gaps = 16/871 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || ||| | ||||| |||| ||||| || ||| | ||||| || || ||| Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960 || | |||||||| |||||||| || || ||||||| || | || || | Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTGCT 18244 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | || | | | |||||| || || || || |||||||| ||||| ||| Sbjct 18243 AAAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGT 18184 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 || ||||| || || | || || |||| || || || | || | | |||||| Sbjct 18183 GCAATTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCT 18124 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 |||||| | || | ||| | | | | | | ||| | || | | || || || Sbjct 18123 AACTGCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTT 18064 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 || |||| || ||||| |||||||| || || || ||||| || || || || || || Sbjct 18063 GAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGA 18004 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 |||||| || || || || || ||||||||||| | ||| ||||| | ||||| ||||| Sbjct 18003 AAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACC 17944 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 ||||| || |||||||| ||||| ||||| |||| || | ||| ||||||||| | Sbjct 17943 AGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTC 17884 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 ||| | | ||||| |||||| | ||| || | || || || ||| | || Sbjct 17883 TTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTC 17824 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || ||||| || | | | | |||| || ||| ||| ||||| || || | | Sbjct 17823 AATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAG 17764 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||||||||||| ||||| || |||||||| || ||| |||| ||||| ||||| | || Sbjct 17763 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGC 17704 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 || | | ||||||||| | ||| || | |||||||| || ||||| || || Sbjct 17703 TTCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATC 17644 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACA 13616 ||| || ||||| ||||| || || ||| ||| || | | | || | ||| | Sbjct 17643 ACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTC--AGG 17586 Query 13617 ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676 ||| ||| | ||| || || || | || ||||| ||| | |||||||| |||| Sbjct 17585 GCTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAG 17528 Query 13677 CAACAGCCTTCTTATACATCATCCATATATC 13707 | |||| |||||||||||| ||| ||||| Sbjct 17527 CCTCAGCTTTCTTATACATCTGCCAAATATC 17497 >seq404197 Length=65104 Score = 217 bits (240), Expect = 1e-51 Identities = 576/873 (66%), Gaps = 20/873 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || ||| | ||||| |||| ||||| || ||||| ||||| || || ||| Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960 || | ||| |||| |||||||| || || ||||||| || | || || | Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTGCT 52967 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | || || | | |||||| || | || | |||||||| ||||| ||| | Sbjct 52966 AAAACCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGC 52907 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 || ||||| || || | || || | | || || || | || | | |||||| Sbjct 52906 GCAATTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCT 52847 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 |||||| | || | || ||| | | | | ||| | || | | || || || Sbjct 52846 AACTGCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTT 52787 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||||||| | ||||| |||||||| || || || ||||| || || || || || || Sbjct 52786 GAACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGA 52727 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 |||||| || || ||||| || |||| ||| || | ||| ||||| | ||||| ||||| Sbjct 52726 AAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACC 52667 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCA-AC-CTTTCACCATACGTACTA 13318 ||||| || |||||||| ||||| ||||| |||| | || |||||| ||| || Sbjct 52666 AGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAG--TACCTAGCC 52609 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | ||| ||| ||||| |||||| | ||| || | || || || ||| | Sbjct 52608 TCTTTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 52549 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || || ||||| || | | | | |||| || ||| ||| ||||| || || | Sbjct 52548 TCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGG 52489 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| | Sbjct 52488 AGACTATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGG 52429 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || || | | ||||||||| | || | || | | |||||| || |||| ||| Sbjct 52428 GCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCG 52369 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGA 13614 ||||| || ||| | |||| || | ||| | | || | | | || | ||| | Sbjct 52368 TCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTC--A 52311 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 ||| || | ||| || || || | || ||||||||| | ||||| || || Sbjct 52310 GGGCTT--CCCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGA 52253 Query 13675 AGCAACAGCCTTCTTATACATCATCCATATATC 13707 ||| |||| |||||| ||||| ||| ||||| Sbjct 52252 AGCCTCAGCGTTCTTACACATCTGCCAAATATC 52220 >seq400361 Length=55729 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 38540 CCACCACCCTTTCCCC 38555 >seq418289 Length=29330 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || || || || |||||||| || || ||||| || ||||||||||| Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671 Query 13295 A 13295 | Sbjct 26670 A 26670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428768724088488