Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 282 4e-71
seq404197 217 1e-51
seq400361 114 1e-20
seq418289 105 6e-18
>seq366024
Length=42324
Score = 282 bits (312), Expect = 4e-71
Identities = 587/871 (67%), Gaps = 16/871 (2%)
Strand=Plus/Minus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||| || ||| | ||||| |||| ||||| || ||| | ||||| || || |||
Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960
|| | |||||||| |||||||| || || ||||||| || | || || |
Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTGCT 18244
Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020
| | || | || | | | |||||| || || || || |||||||| ||||| |||
Sbjct 18243 AAAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGT 18184
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
|| ||||| || || | || || |||| || || || | || | | ||||||
Sbjct 18183 GCAATTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCT 18124
Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140
|||||| | || | ||| | | | | | | ||| | || | | || || ||
Sbjct 18123 AACTGCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTT 18064
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
|| |||| || ||||| |||||||| || || || ||||| || || || || || ||
Sbjct 18063 GAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGA 18004
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
|||||| || || || || || ||||||||||| | ||| ||||| | ||||| |||||
Sbjct 18003 AAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACC 17944
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320
||||| || |||||||| ||||| ||||| |||| || | ||| ||||||||| |
Sbjct 17943 AGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTC 17884
Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380
||| | | ||||| |||||| | ||| || | || || || ||| | ||
Sbjct 17883 TTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTC 17824
Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440
|| ||||| || | | | | |||| || ||| ||| ||||| || || | |
Sbjct 17823 AATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAG 17764
Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500
||||||||||| ||||| || |||||||| || ||| |||| ||||| ||||| | ||
Sbjct 17763 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGC 17704
Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
|| | | ||||||||| | ||| || | |||||||| || ||||| || ||
Sbjct 17703 TTCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATC 17644
Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACA 13616
||| || ||||| ||||| || || ||| ||| || | | | || | ||| |
Sbjct 17643 ACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTC--AGG 17586
Query 13617 ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676
||| ||| | ||| || || || | || ||||| ||| | |||||||| ||||
Sbjct 17585 GCTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAG 17528
Query 13677 CAACAGCCTTCTTATACATCATCCATATATC 13707
| |||| |||||||||||| ||| |||||
Sbjct 17527 CCTCAGCTTTCTTATACATCTGCCAAATATC 17497
>seq404197
Length=65104
Score = 217 bits (240), Expect = 1e-51
Identities = 576/873 (66%), Gaps = 20/873 (2%)
Strand=Plus/Minus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||| || ||| | ||||| |||| ||||| || ||||| ||||| || || |||
Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960
|| | ||| |||| |||||||| || || ||||||| || | || || |
Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTGCT 52967
Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020
| | || | || || | | |||||| || | || | |||||||| ||||| ||| |
Sbjct 52966 AAAACCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGC 52907
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
|| ||||| || || | || || | | || || || | || | | ||||||
Sbjct 52906 GCAATTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCT 52847
Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140
|||||| | || | || ||| | | | | ||| | || | | || || ||
Sbjct 52846 AACTGCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTT 52787
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
||||||| | ||||| |||||||| || || || ||||| || || || || || ||
Sbjct 52786 GAACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGA 52727
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
|||||| || || ||||| || |||| ||| || | ||| ||||| | ||||| |||||
Sbjct 52726 AAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACC 52667
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCA-AC-CTTTCACCATACGTACTA 13318
||||| || |||||||| ||||| ||||| |||| | || |||||| ||| ||
Sbjct 52666 AGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAG--TACCTAGCC 52609
Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378
| ||| ||| ||||| |||||| | ||| || | || || || ||| |
Sbjct 52608 TCTTTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 52549
Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438
|| || ||||| || | | | | |||| || ||| ||| ||||| || || |
Sbjct 52548 TCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGG 52489
Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498
| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| |
Sbjct 52488 AGACTATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGG 52429
Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558
|| || | | ||||||||| | || | || | | |||||| || |||| |||
Sbjct 52428 GCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCG 52369
Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGA 13614
||||| || ||| | |||| || | ||| | | || | | | || | ||| |
Sbjct 52368 TCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTC--A 52311
Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674
||| || | ||| || || || | || ||||||||| | ||||| || ||
Sbjct 52310 GGGCTT--CCCGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGA 52253
Query 13675 AGCAACAGCCTTCTTATACATCATCCATATATC 13707
||| |||| |||||| ||||| ||| |||||
Sbjct 52252 AGCCTCAGCGTTCTTACACATCTGCCAAATATC 52220
>seq400361
Length=55729
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| ||| |
Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539
Query 13293 CTATCAACCTTTCACC 13308
| | || |||||| ||
Sbjct 38540 CCACCACCCTTTCCCC 38555
>seq418289
Length=29330
Score = 105 bits (116), Expect = 6e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|| ||||| || || || || || |||||||| || || ||||| || |||||||||||
Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| |||
Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671
Query 13295 A 13295
|
Sbjct 26670 A 26670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428768724088488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |