Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 259 3e-64
seq273439 141 6e-29
seq397969 102 6e-17
>seq397970
Length=5258
Score = 259 bits (286), Expect = 3e-64
Identities = 406/580 (70%), Gaps = 6/580 (1%)
Strand=Plus/Minus
Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446
|||| || || || || || | || |||||| | |||||| | || | ||||| |||||
Sbjct 2282 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGT 2223
Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506
| | ||| || ||||||| |||||| ||||| || || || | || || || | || |
Sbjct 2222 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 2163
Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566
| |||||||| | || ||||||||||||||| ||||| || || | ||||| |
Sbjct 2162 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATAT 2108
Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626
| || ||||||||||| ||||| || || ||||| ||| |||||| ||||| ||
Sbjct 2107 CTCCT-GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAA 2049
Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686
| || || |||||| || || || || || | ||||| || ||||| || |||| |
Sbjct 2048 AGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGG 1989
Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746
||||| | ||||| || |||||| |||| || | |||||||| |||||
Sbjct 1988 ATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCT 1929
Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806
|| || | || || |||| ||| || |||| || || || |||| |||||||
Sbjct 1928 ACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCAC 1869
Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866
|| || || || || || |||| || || ||| | ||| || ||| | |||
Sbjct 1868 TGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCC 1809
Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926
|| ||||||| ||| |||||||| |||||||| || || ||||| || ||||| ||
Sbjct 1808 AAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 1749
Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCG 25966
| ||||||||| || ||| |||||||||| |||| |||
Sbjct 1748 GCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCG 1709
>seq273439
Length=4507
Score = 141 bits (156), Expect = 6e-29
Identities = 383/573 (67%), Gaps = 20/573 (3%)
Strand=Plus/Minus
Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446
||||||||| || || || | || ||||| | |||||| | || | |||||||||||
Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397
Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506
| | ||| || ||||||| |||||| ||| | || || || | || || || | || |
Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337
Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566
| |||||||| ||||| || |||||||||| ||| |||| || || | ||| |||
Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277
Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626
| || ||||||||||| ||||| || || ||||| | || |||||| || || ||
Sbjct 2276 -CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAA 2219
Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAG-TCTTTAGGGTTCCAGGCGCACAC 25685
| || | ||| | | | ||| ||| ||| ||||| | ||||| || || |
Sbjct 2218 AGGGCG--GCA--GGGTATGAG-----AGG---AAGATCTTT-TGATTCCAAGCACATAG 2172
Query 25686 GATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATC 25745
||||| | |||||||| || ||| |||| || |||||||| || ||
Sbjct 2171 AATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTC 2112
Query 25746 CACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCC 25804
|| || | || || | | || || |||| || || | ||| ||||||
Sbjct 2111 TACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCC 2052
Query 25805 ACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCCCTCTTA 25863
|||| || | | || || |||| || || ||||| ||| | | || || |
Sbjct 2051 ACTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTG-GTGGAGAGTACCAGGCTG 1993
Query 25864 TCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 25923
||||| ||||||| ||| || | ||| |||||||| || || ||||| || |||||
Sbjct 1992 TCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCC 1933
Query 25924 TTGGAGTTTGTGGACCCTCTGACGAACCACAGC 25956
|| | |||||||| || ||| |||||||||
Sbjct 1932 TTAGCATTTGTGGAGCCCTTGATCAACCACAGC 1900
>seq397969
Length=7843
Score = 102 bits (112), Expect = 6e-17
Identities = 114/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| ||||| || ||||||||||||||| ||||| || || | ||||||
Sbjct 7697 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 7638
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | || ||||||||| | ||||| || || ||||| ||| |||||| ||||| ||
Sbjct 7637 T-CTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 7579
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656
| || || |||||| || || || || |||
Sbjct 7578 AAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338390534663412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |