Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq397970 259 3e-64 seq273439 141 6e-29 seq397969 102 6e-17 >seq397970 Length=5258 Score = 259 bits (286), Expect = 3e-64 Identities = 406/580 (70%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || || || || || | || |||||| | |||||| | || | ||||| ||||| Sbjct 2282 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGT 2223 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || ||||||| |||||| ||||| || || || | || || || | || | Sbjct 2222 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 2163 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| | || ||||||||||||||| ||||| || || | ||||| | Sbjct 2162 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATAT 2108 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 2107 CTCCT-GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAA 2049 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || || |||||| || || || || || | ||||| || ||||| || |||| | Sbjct 2048 AGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGG 1989 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || |||||| |||| || | |||||||| ||||| Sbjct 1988 ATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCT 1929 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || | || || |||| ||| || |||| || || || |||| ||||||| Sbjct 1928 ACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCAC 1869 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 || || || || || || |||| || || ||| | ||| || ||| | ||| Sbjct 1868 TGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCC 1809 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 || ||||||| ||| |||||||| |||||||| || || ||||| || ||||| || Sbjct 1808 AAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 1749 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCG 25966 | ||||||||| || ||| |||||||||| |||| ||| Sbjct 1748 GCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCG 1709 >seq273439 Length=4507 Score = 141 bits (156), Expect = 6e-29 Identities = 383/573 (67%), Gaps = 20/573 (3%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| || || || | || ||||| | |||||| | || | ||||||||||| Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || ||||||| |||||| ||| | || || || | || || || | || | Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| ||||| || |||||||||| ||| |||| || || | ||| ||| Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| ||||| || || ||||| | || |||||| || || || Sbjct 2276 -CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAA 2219 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAG-TCTTTAGGGTTCCAGGCGCACAC 25685 | || | ||| | | | ||| ||| ||| ||||| | ||||| || || | Sbjct 2218 AGGGCG--GCA--GGGTATGAG-----AGG---AAGATCTTT-TGATTCCAAGCACATAG 2172 Query 25686 GATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATC 25745 ||||| | |||||||| || ||| |||| || |||||||| || || Sbjct 2171 AATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTC 2112 Query 25746 CACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCC 25804 || || | || || | | || || |||| || || | ||| |||||| Sbjct 2111 TACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCC 2052 Query 25805 ACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCCCTCTTA 25863 |||| || | | || || |||| || || ||||| ||| | | || || | Sbjct 2051 ACTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTG-GTGGAGAGTACCAGGCTG 1993 Query 25864 TCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 25923 ||||| ||||||| ||| || | ||| |||||||| || || ||||| || ||||| Sbjct 1992 TCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCC 1933 Query 25924 TTGGAGTTTGTGGACCCTCTGACGAACCACAGC 25956 || | |||||||| || ||| ||||||||| Sbjct 1932 TTAGCATTTGTGGAGCCCTTGATCAACCACAGC 1900 >seq397969 Length=7843 Score = 102 bits (112), Expect = 6e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 7697 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 7638 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||| | ||||| || || ||||| ||| |||||| ||||| || Sbjct 7637 T-CTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 7579 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || || |||||| || || || || ||| Sbjct 7578 AAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338390534663412