Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq245831 188 1e-42
seq407932 170 3e-37
seq231592 107 3e-18
>seq245831
Length=393
Score = 188 bits (208), Expect = 1e-42
Identities = 211/281 (75%), Gaps = 1/281 (0%)
Strand=Plus/Minus
Query 9597 AATGTTGATTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACT 9656
||| || || ||||| || || | || || | | | ||||| ||||| || || ||
Sbjct 381 AATCTTAATAGTTTCTCCTATCAGTATCAGCCTACTCGTCTGGAACAGCTGCTCATCGTC 322
Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716
|||||||||||| || |||| || ||||| ||||||||||| ||||||| ||||| ||
Sbjct 321 CCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAGCCAAAT 262
Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776
|| ||||||||||| |||||||||||||| ||||| | || || || ||||| | ||
Sbjct 261 TGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCCTGCCCCACAGCAAACCG 202
Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836
|| | ||| || || | || || |||||||| | ||||| ||||||||| | |||
Sbjct 201 CAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGAGTATCTTTGACTGTGGG 142
Query 9837 GGGATACATTTCACCGTCAATAATCTGATACTT-ATCTTTC 9876
|||||||| || || |||| |||||||| || || ||||
Sbjct 141 AGGATACATCTCGCCACCAATTATCTGATATTTCATTTTTC 101
>seq407932
Length=7429
Score = 170 bits (188), Expect = 3e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||||||||| || || || |||||||||||| || |||| || ||||| ||||||
Sbjct 6032 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 5973
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||||| ||||| || || ||||||||||| ||||||||||| || |||||
Sbjct 5972 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 5913
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || ||||| | |||| | ||| || || | || || |||||||| |
Sbjct 5912 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 5853
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||| || || |||| ||||
Sbjct 5852 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 5804
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| | | |||| | ||||| || || |||||| ||| ||| | ||
Sbjct 4987 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 4928
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 4927 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 4868
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | ||||| |||||||||||| | | | ||| || || |
Sbjct 4867 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 4808
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| | |||| || |||||
Sbjct 4807 TTTCCTCCCTGAAAAATGAGAA 4786
Score = 89.7 bits (98), Expect = 7e-13
Identities = 182/265 (69%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | ||||| ||||| || | ||| || | |||||| |
Sbjct 6601 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 6542
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440
| || | ||| ||||| || | || || || |||| || | ||||||||
Sbjct 6541 AGTAGGAGGGAGTTGTTATAGATAAA-TTGCTGATAGTTGTAGTGCTGGCCATCAATCTG 6483
Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500
||| | || |||| || | ||||||||| || | |||||||||| | | |||||
Sbjct 6482 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 6423
Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559
|||||||||||||| | | ||| ||||| || || | |||| || | ||||
Sbjct 6422 GTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 6364
Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584
| ||||| || || ||||| |||||
Sbjct 6363 GATAGCCACTCAGGTGCTGTACATA 6339
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || || | ||| || ||||| |||| || | |
Sbjct 4379 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 4320
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||| || || || || |||||||||||| || ||||| | | || || |
Sbjct 4319 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 4260
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||| ||||||| || ||||| |||||
Sbjct 4259 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 4227
>seq231592
Length=10868
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| |||| || ||||| || ||||| | |||||||| |||| || ||||| |||
Sbjct 8334 AAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTACTCCGGAGAACAGATAGGATTC 8275
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| || |||||||| |||||||| | || | || ||||| || ||||||
Sbjct 8274 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 8215
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| ||| || ||| || | | | || | ||| ||||||| || |||||||||
Sbjct 8214 GAGTTTGGAGGGCACTTCTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 8155
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || || || | || || || || ||||| ||||||
Sbjct 8154 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 8113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 704792255927360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |