Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq245831 188 1e-42 seq407932 170 3e-37 seq231592 107 3e-18 >seq245831 Length=393 Score = 188 bits (208), Expect = 1e-42 Identities = 211/281 (75%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 9597 AATGTTGATTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACT 9656 ||| || || ||||| || || | || || | | | ||||| ||||| || || || Sbjct 381 AATCTTAATAGTTTCTCCTATCAGTATCAGCCTACTCGTCTGGAACAGCTGCTCATCGTC 322 Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 |||||||||||| || |||| || ||||| ||||||||||| ||||||| ||||| || Sbjct 321 CCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAGCCAAAT 262 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 || ||||||||||| |||||||||||||| ||||| | || || || ||||| | || Sbjct 261 TGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCCTGCCCCACAGCAAACCG 202 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 || | ||| || || | || || |||||||| | ||||| ||||||||| | ||| Sbjct 201 CAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGAGTATCTTTGACTGTGGG 142 Query 9837 GGGATACATTTCACCGTCAATAATCTGATACTT-ATCTTTC 9876 |||||||| || || |||| |||||||| || || |||| Sbjct 141 AGGATACATCTCGCCACCAATTATCTGATATTTCATTTTTC 101 >seq407932 Length=7429 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||||||||| || || || |||||||||||| || |||| || ||||| |||||| Sbjct 6032 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 5973 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || ||||||||||| ||||||||||| || ||||| Sbjct 5972 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 5913 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 5912 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 5853 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || |||| |||| Sbjct 5852 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 5804 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 4987 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 4928 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 4927 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 4868 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| | | | ||| || || | Sbjct 4867 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 4808 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 4807 TTTCCTCCCTGAAAAATGAGAA 4786 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 6601 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 6542 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | || | ||| ||||| || | || || || |||| || | |||||||| Sbjct 6541 AGTAGGAGGGAGTTGTTATAGATAAA-TTGCTGATAGTTGTAGTGCTGGCCATCAATCTG 6483 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 6482 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 6423 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 |||||||||||||| | | ||| ||||| || || | |||| || | |||| Sbjct 6422 GTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 6364 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || || ||||| ||||| Sbjct 6363 GATAGCCACTCAGGTGCTGTACATA 6339 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 4379 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 4320 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || ||||| | | || || | Sbjct 4319 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 4260 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||| ||||||| || ||||| ||||| Sbjct 4259 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 4227 >seq231592 Length=10868 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || ||||| || ||||| | |||||||| |||| || ||||| ||| Sbjct 8334 AAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTACTCCGGAGAACAGATAGGATTC 8275 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| |||||||| | || | || ||||| || |||||| Sbjct 8274 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 8215 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| ||||||| || ||||||||| Sbjct 8214 GAGTTTGGAGGGCACTTCTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 8155 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || ||||| |||||| Sbjct 8154 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 8113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704792255927360