Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 246 3e-60
seq404197 145 8e-30
seq386614 127 2e-24
seq400361 93.3 4e-14
>seq366024
Length=42324
Score = 246 bits (272), Expect = 3e-60
Identities = 594/895 (66%), Gaps = 10/895 (1%)
Strand=Plus/Minus
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
||||| | || ||| | ||||| || | ||||| || || | || || ||||| |||
Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
|||| ||| ||| |||||||| |||||||||||||| | | || | || || ||
Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240
Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349
||||| || | | ||| ||||| || ||||| || || || ||| || |||
Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180
Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409
||||| || || | || || || || || | || | || | |||||| ||
Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120
Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAA 21467
|| | || ||||| ||||| || || | ||| | | | ||||| |
Sbjct 18119 GCATTGACGATTAT--TTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA 18062
Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527
| |||| || ||||| ||||| || ||||| || || || || || | |||||| ||||
Sbjct 18061 ATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAA 18002
Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG 21587
|||| | ||||| || | |||| ||||| | ||| ||||| || ||||| | || |
Sbjct 18001 ATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAG 17942
Query 21588 AAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTT 21647
||||||| || || || || |||||||| || || || ||||| || || |||| ||||
Sbjct 17941 AAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTT 17882
Query 21648 TATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCA 21706
| ||| ||||| ||||| | |||||| ||||||| |||| ||||| |||
Sbjct 17881 TGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTAC-ACAAGGCATTGTCTCA 17823
Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766
||||| || || ||| | |||| | ||| | ||| |
Sbjct 17822 ATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 17763
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||||||||| || ||||| || || || | || || || ||||| | ||
Sbjct 17762 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCT 17703
Query 21827 TCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|| | | ||||| || | |||| | | | ||||||||||||||||||| |||||
Sbjct 17702 TCCGTAATCTGAACTTCTTGGCTAAACTGCTCCA-CCAAGTTTTCATTTACTATGCCATC 17644
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
||| || ||||| || |||| |||| || ||||||| || | | | |
Sbjct 17643 ACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 17584
Query 21946 TTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004
|| ||| | || | | || || || | || || ||||||| |||||||||| |||
Sbjct 17583 TTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 17525
Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
||| || |||||||| ||| ||||||| ||| | || ||||| || |||||
Sbjct 17524 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470
>seq404197
Length=65104
Score = 145 bits (160), Expect = 8e-30
Identities = 471/730 (65%), Gaps = 8/730 (1%)
Strand=Plus/Minus
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
||||| | |||||| | ||||| || | ||||| || || || || || ||||| |||
Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
|||| ||| || |||||||| |||||||||||||| | | || | || || ||
Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963
Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348
||||| || | |||| ||| ||||| | |||| || || || ||| || | ||
Sbjct 52962 CCCAGCTC-CAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCA 52904
Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408
|||||| || || | || || | | || | || | || | |||||| ||
Sbjct 52903 ATTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAAC 52844
Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466
|| | || || |||| || || || | ||| | | | |||||
Sbjct 52843 TGCATTGACGAT--AATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 52786
Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526
||||||| | ||||| ||||| || ||||| || || || || || | |||||| |||
Sbjct 52785 AACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 52726
Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586
||||| | |||||||| | ||||| || || | ||| ||||| || ||||| | ||
Sbjct 52725 AATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 52666
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646
|||||||| || || || || || ||||| || || | || | | ||| ||| |||
Sbjct 52665 GAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCT 52606
Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705
|| ||| ||||| ||||| | |||||| |||||| | |||| ||||| ||
Sbjct 52605 TTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTC 52547
Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765
||| || || || ||| | |||| | ||| |||
Sbjct 52546 AATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAG 52487
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
|||||||||||| |||||||| ||||| || || || || || || || ||| | ||
Sbjct 52486 ACTATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGC 52427
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|| | | ||||| || || || | ||| |||||||||||||| || ||
Sbjct 52426 TTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTC 52367
Query 21886 ACTGGCGGCA 21895
||| || |||
Sbjct 52366 ACTTGCTGCA 52357
>seq386614
Length=30216
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
|| ||||| || ||||| | | | ||||| ||| | ||||||||||| ||||| |||
Sbjct 26433 AGCTCTTCCTCGGTTTCGAACTGAGCAAGAACAGCTTCTAATGAAGTACAGAATGTCTTG 26492
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| ||||||||||| ||| |||||||||||| ||||| || ||| |||||||||||||
Sbjct 26493 CTGAATGTCCAATTCCTTGCATCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 26552
Query 130773 CATCCCTTTGGGCAAGTAACATA 130795
||| | |||||||| || |||||
Sbjct 26553 CATTCTTTTGGGCAGGTGACATA 26575
>seq400361
Length=55729
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||| | ||| ||||||||| ||| | ||||| | | |
Sbjct 24152 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 24211
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || || || || || || ||
Sbjct 24212 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 24271
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||||||||||| |||||||| | || |||
Sbjct 24272 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 24302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529098719990560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |