Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq366024 246 3e-60 seq404197 145 8e-30 seq386614 127 2e-24 seq400361 93.3 4e-14 >seq366024 Length=42324 Score = 246 bits (272), Expect = 3e-60 Identities = 594/895 (66%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | || ||| | ||||| || | ||||| || || | || || ||||| ||| Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| ||| ||| |||||||| |||||||||||||| | | || | || || || Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 ||||| || | | ||| ||||| || ||||| || || || ||| || ||| Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 ||||| || || | || || || || || | || | || | |||||| || Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120 Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAA 21467 || | || ||||| ||||| || || | ||| | | | ||||| | Sbjct 18119 GCATTGACGATTAT--TTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA 18062 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | |||| || ||||| ||||| || ||||| || || || || || | |||||| |||| Sbjct 18061 ATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAA 18002 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG 21587 |||| | ||||| || | |||| ||||| | ||| ||||| || ||||| | || | Sbjct 18001 ATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAG 17942 Query 21588 AAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTT 21647 ||||||| || || || || |||||||| || || || ||||| || || |||| |||| Sbjct 17941 AAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTT 17882 Query 21648 TATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCA 21706 | ||| ||||| ||||| | |||||| ||||||| |||| ||||| ||| Sbjct 17881 TGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTAC-ACAAGGCATTGTCTCA 17823 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 ||||| || || ||| | |||| | ||| | ||| | Sbjct 17822 ATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 17763 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||||||||| || ||||| || || || | || || || ||||| | || Sbjct 17762 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCT 17703 Query 21827 TCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | ||||| || | |||| | | | ||||||||||||||||||| ||||| Sbjct 17702 TCCGTAATCTGAACTTCTTGGCTAAACTGCTCCA-CCAAGTTTTCATTTACTATGCCATC 17644 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| || ||||| || |||| |||| || ||||||| || | | | | Sbjct 17643 ACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 17584 Query 21946 TTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 || ||| | || | | || || || | || || ||||||| |||||||||| ||| Sbjct 17583 TTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 17525 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| || |||||||| ||| ||||||| ||| | || ||||| || ||||| Sbjct 17524 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 145 bits (160), Expect = 8e-30 Identities = 471/730 (65%), Gaps = 8/730 (1%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | |||||| | ||||| || | ||||| || || || || || ||||| ||| Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| ||| || |||||||| |||||||||||||| | | || | || || || Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963 Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 ||||| || | |||| ||| ||||| | |||| || || || ||| || | || Sbjct 52962 CCCAGCTC-CAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCA 52904 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 |||||| || || | || || | | || | || | || | |||||| || Sbjct 52903 ATTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAAC 52844 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466 || | || || |||| || || || | ||| | | | ||||| Sbjct 52843 TGCATTGACGAT--AATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 52786 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| | ||||| ||||| || ||||| || || || || || | |||||| ||| Sbjct 52785 AACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 52726 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 ||||| | |||||||| | ||||| || || | ||| ||||| || ||||| | || Sbjct 52725 AATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 52666 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 |||||||| || || || || || ||||| || || | || | | ||| ||| ||| Sbjct 52665 GAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCT 52606 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705 || ||| ||||| ||||| | |||||| |||||| | |||| ||||| || Sbjct 52605 TTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTC 52547 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 ||| || || || ||| | |||| | ||| ||| Sbjct 52546 AATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAG 52487 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||||||||| |||||||| ||||| || || || || || || || ||| | || Sbjct 52486 ACTATACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGC 52427 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | ||||| || || || | ||| |||||||||||||| || || Sbjct 52426 TTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTC 52367 Query 21886 ACTGGCGGCA 21895 ||| || ||| Sbjct 52366 ACTTGCTGCA 52357 >seq386614 Length=30216 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || ||||| || ||||| | | | ||||| ||| | ||||||||||| ||||| ||| Sbjct 26433 AGCTCTTCCTCGGTTTCGAACTGAGCAAGAACAGCTTCTAATGAAGTACAGAATGTCTTG 26492 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||| |||||||||||| ||||| || ||| ||||||||||||| Sbjct 26493 CTGAATGTCCAATTCCTTGCATCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 26552 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||| | |||||||| || ||||| Sbjct 26553 CATTCTTTTGGGCAGGTGACATA 26575 >seq400361 Length=55729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 24152 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 24211 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 24212 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 24271 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 24272 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 24302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529098719990560