Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 408 5e-109
seq404197 338 8e-88
seq327453 140 4e-28
seq418289 138 1e-27
seq400361 107 2e-18
seq265909 95.1 1e-14
>seq366024
Length=42324
Score = 408 bits (452), Expect = 5e-109
Identities = 651/933 (70%), Gaps = 6/933 (1%)
Strand=Plus/Minus
Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014
||| |||||| |||| || | ||| ||| ||| || ||||| |||| ||| |
Sbjct 18402 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCAGACTGGACATCACTCTCATCCT 18343
Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074
|| || || || || | || || | || ||||| || ||||||| ||| ||||| ||
Sbjct 18342 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 18283
Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134
||| || ||||| ||||| || | ||| || |||| |||| || || |
Sbjct 18282 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAAG 18223
Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194
||| || || |||||||| || || ||||||| |||||||| || || || ||
Sbjct 18222 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 18163
Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254
||||| || || | || || || || ||||| || || |||| || || |
Sbjct 18162 CACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 18103
Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314
| | || | | || ||| || | | ||||| || |||| || || || ||
Sbjct 18102 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAGTC 18043
Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374
||||| | |||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||
Sbjct 18042 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTATCAG 17983
Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434
|| || ||||| ||||| ||||| || || || || |||||||||||||||||||| ||
Sbjct 17982 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 17923
Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33491
|||||||||||| | | | |||||||| | | | |||| |||||
Sbjct 17922 TGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAA 17863
Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551
|||||||| |||||||| |||||||||||||| || || || || || |||||| | |
Sbjct 17862 GGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTC 17803
Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611
|||| || |||||||| ||||| || || | |||||||||||||| ||||| ||
Sbjct 17802 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGAT 17743
Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671
|||||| ||||| || | || || |||||||| | || || |||||||| ||||||
Sbjct 17742 GTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 17683
Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731
| ||| | ||| |||| |||||||| ||||| || ||||| |||||||| || ||||
Sbjct 17682 GCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 17623
Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791
| ||| || |||||| | || || || | || | ||| | | || || ||
Sbjct 17622 AATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 17563
Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851
|| | || || ||||| |||||||||| || ||||| || || |||||||| | |||
Sbjct 17562 GGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 17503
Query 33852 GATGTCATAATATTGGATTGGGAAAATAACAAA 33884
|| |||| |||| ||| || || || |||||
Sbjct 17502 AATATCATGGTATTTGATAGGAAAGATGACAAA 17470
>seq404197
Length=65104
Score = 338 bits (374), Expect = 8e-88
Identities = 620/907 (68%), Gaps = 6/907 (1%)
Strand=Plus/Minus
Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014
||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| |
Sbjct 53125 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 53066
Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074
|| || || || || | || || || || ||||| || ||||||| ||| |||| ||
Sbjct 53065 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATTCTC 53006
Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134
||| || ||||| ||||| || | ||| || |||| |||| || || |
Sbjct 53005 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 52946
Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194
||| || || | ||||| || || ||||||| | |||||||| || || || ||
Sbjct 52945 TCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAGCTT 52886
Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254
|||| | ||| | || || || || ||||| || || |||| |||||
Sbjct 52885 CACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATAATTTC 52826
Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314
| | || | | || ||| || | | ||||| ||||||| | || || ||
Sbjct 52825 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAAGTC 52766
Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374
||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||
Sbjct 52765 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 52706
Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434
|| | || || ||||| ||||| || || || || |||||||||||||||||||| ||
Sbjct 52705 TCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 52646
Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTG 33491
||| |||||||| | | | || || || | || |||| | |||||
Sbjct 52645 TGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATCCAGCGCAA 52586
Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551
|||||||| |||||||| |||||||||||||| || || ||||| || |||||| | |
Sbjct 52585 GGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTC 52526
Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611
|||| || ||||| || ||||| || || | |||||||||||||||||||| ||
Sbjct 52525 CCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTAT 52466
Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671
|||||| ||||| || || || || |||||| | || || |||||||| ||||||
Sbjct 52465 GTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTG 52406
Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731
| || || ||| ||| |||||||| |||| |||||||| |||||| | || | ||
Sbjct 52405 GCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAG 52346
Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791
||||| | |||||| | || || || | || | || | | || || ||
Sbjct 52345 GACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCTT 52286
Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851
|| | || || || || | ||||| || || ||||| || || ||| |||| | |||
Sbjct 52285 GGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCA 52226
Query 33852 GATGTCA 33858
|| |||
Sbjct 52225 AATATCA 52219
>seq327453
Length=26950
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 17905 CTGTTTCTTATACCATA 17921
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 26476 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 26535
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 26536 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 26595
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 26596 AGGCTCCAGGTAAATAGC 26613
Score = 91.5 bits (100), Expect = 2e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || || || || | || || || |||||||| || || || || || || |
Sbjct 22130 CATAGGTTTCATACGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 22189
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| ||||||| |||||| | || || ||| | || ||||| || |
Sbjct 22190 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 22249
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752
| | | |||||||| || || || | ||||| || ||||| || || || | |||
Sbjct 22250 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 22307
>seq418289
Length=29330
Score = 138 bits (152), Expect = 1e-27
Identities = 103/121 (85%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || ||||
Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||| ||||| |||||||
Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673
Query 33446 C 33446
|
Sbjct 26672 C 26672
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 24796 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 24737
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| || || || |||||||| | || || |||||||| |||||| | ||| || ||
Sbjct 24736 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTC 24677
Query 33684 CGCC 33687
| ||
Sbjct 24676 CACC 24673
>seq400361
Length=55729
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| |||||||| || ||||| ||||| || || | || ||
Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||||||
Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 38540
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||||||||||||||| ||||||||||||||||||||||| || || | || ||||
Sbjct 42768 CCAAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 42827
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803
|||| || || |||| | | || || ||||| | | || ||| || |||| ||| ||
Sbjct 42828 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 42885
>seq265909
Length=7629
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/216 (70%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 31086 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31145
||||| | ||| ||||| || | |||||| ||| |||| |||| | | || ||||| ||
Sbjct 2321 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 2262
Query 31146 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31205
|||| ||| | | || || | |||| | ||| ||| ||||| || | || ||
Sbjct 2261 AATTCGATCATCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 2202
Query 31206 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31262
| |||| ||||||||||| ||||| ||||| |||||| ||| || | ||||
Sbjct 2201 AACACTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2142
Query 31263 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31298
| || ||||| | ||||||| ||| ||||||||
Sbjct 2141 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCA 2106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619665483003040
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