Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq397970 109 1e-18 seq327453 96.9 9e-15 seq366024 89.7 1e-12 >seq397970 Length=5258 Score = 109 bits (120), Expect = 1e-18 Identities = 401/616 (65%), Gaps = 19/616 (3%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTT-CTGTG 111373 ||||| || || ||||| || || | || ||||| || ||| || | || ||||| Sbjct 1666 TTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTT-TCGGAGGAGTTGCTGTG 1724 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 |||||| ||| ||||| || || || || | | || || ||||| ||||| Sbjct 1725 GTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGA 1784 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTCGA-CAACGAAGAAGGT 111491 || ||||| || || ||||| | || ||| ||| || || | || | |||||| Sbjct 1785 TGCCAATGGGTCCCGAGACTTCTTGGA--CAGCCTGGGATTCTCCACCAGAGCAGAAGGG 1842 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551 ||| | || |||||||| || ||||| ||| | || ||||| || || |||||| ||| Sbjct 1843 GATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGATATG 1902 Query 111552 CACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 || ||| || ||||| || ||| |||||| | || || || | ||| ||| Sbjct 1903 ---GATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 1959 Query 111609 AAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGA 111667 || | |||||| || | | | || || || |||| ||||| ||||| | | Sbjct 1960 AAAACCAACCCTGACGAC-AGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCC 2018 Query 111668 AAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCT 111727 ||||| || || || || || | |||||||| || || |||| ||| Sbjct 2019 TCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCT 2078 Query 111728 TTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 || ||||| |||| ||| | || | ||||| || || ||||| || || || || || Sbjct 2079 GTCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCGC 2138 Query 111788 AAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATT 111847 || ||||| || | ||| || ||||| || | || || || || ||||| || Sbjct 2139 CAGCTACGCCCTGC-TACATG----ATCGCACACATCACGGGCCTGAAGCCAGGTGACTT 2193 Query 111848 CATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACA 111907 | ||| | | |||||||| || ||||| || |||||||| || |||| || Sbjct 2194 TGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCTGCTGAAAATTCA 2253 Query 111908 GTTGAAGCGCAAACCA 111923 | | |||| ||||| Sbjct 2254 GCTTCAGCGAGAACCA 2269 >seq327453 Length=26950 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 25310 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 25251 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 25250 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTAGGAACGATCAAATGC 25191 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 25190 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 25158 >seq366024 Length=42324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 17842 AAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAGGCTACGTATGGAGAA 17901 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| | | || ||||||| || ||||| || ||||||||||| | ||| | || Sbjct 17902 CGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATA 17961 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| |||||||| | | || || || || || ||||| ||||| | |||||| Sbjct 17962 TTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGC 18021 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTAT 22651 |||| |||||| | || || ||||| || || ||| Sbjct 18022 AGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATAT 18061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1296315814769208