Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 109 1e-18
seq327453 96.9 9e-15
seq366024 89.7 1e-12
>seq397970
Length=5258
Score = 109 bits (120), Expect = 1e-18
Identities = 401/616 (65%), Gaps = 19/616 (3%)
Strand=Plus/Plus
Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTT-CTGTG 111373
||||| || || ||||| || || | || ||||| || ||| || | || |||||
Sbjct 1666 TTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTT-TCGGAGGAGTTGCTGTG 1724
Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433
|||||| ||| ||||| || || || || | | || || ||||| |||||
Sbjct 1725 GTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGA 1784
Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTCGA-CAACGAAGAAGGT 111491
|| ||||| || || ||||| | || ||| ||| || || | || | ||||||
Sbjct 1785 TGCCAATGGGTCCCGAGACTTCTTGGA--CAGCCTGGGATTCTCCACCAGAGCAGAAGGG 1842
Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551
||| | || |||||||| || ||||| ||| | || ||||| || || |||||| |||
Sbjct 1843 GATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGATATG 1902
Query 111552 CACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608
|| ||| || ||||| || ||| |||||| | || || || | ||| |||
Sbjct 1903 ---GATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 1959
Query 111609 AAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGA 111667
|| | |||||| || | | | || || || |||| ||||| ||||| | |
Sbjct 1960 AAAACCAACCCTGACGAC-AGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCC 2018
Query 111668 AAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCT 111727
||||| || || || || || | |||||||| || || |||| |||
Sbjct 2019 TCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCT 2078
Query 111728 TTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787
|| ||||| |||| ||| | || | ||||| || || ||||| || || || || ||
Sbjct 2079 GTCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCGC 2138
Query 111788 AAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATT 111847
|| ||||| || | ||| || ||||| || | || || || || ||||| ||
Sbjct 2139 CAGCTACGCCCTGC-TACATG----ATCGCACACATCACGGGCCTGAAGCCAGGTGACTT 2193
Query 111848 CATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACA 111907
| ||| | | |||||||| || ||||| || |||||||| || |||| ||
Sbjct 2194 TGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCTGCTGAAAATTCA 2253
Query 111908 GTTGAAGCGCAAACCA 111923
| | |||| |||||
Sbjct 2254 GCTTCAGCGAGAACCA 2269
>seq327453
Length=26950
Score = 96.9 bits (106), Expect = 9e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| |||||||| || || || |||
Sbjct 25310 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 25251
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || ||| |||||||||| |||| || || || |
Sbjct 25250 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTAGGAACGATCAAATGC 25191
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
|||||||| || || || || | || || |||
Sbjct 25190 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 25158
>seq366024
Length=42324
Score = 89.7 bits (98), Expect = 1e-12
Identities = 152/220 (69%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491
||||| |||||||||||||| || ||||| | |||| || | | | | |||
Sbjct 17842 AAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAGGCTACGTATGGAGAA 17901
Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551
||| | | || ||||||| || ||||| || ||||||||||| | ||| | ||
Sbjct 17902 CGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATA 17961
Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611
|| ||||| |||||||| | | || || || || || ||||| ||||| | ||||||
Sbjct 17962 TTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGC 18021
Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTAT 22651
|||| |||||| | || || ||||| || || |||
Sbjct 18022 AGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATAT 18061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1296315814769208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |