Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq252726 113 3e-20 seq258579 105 4e-18 seq357599 100 2e-16 seq393589 95.1 8e-15 seq397443 84.2 1e-11 seq411564 82.4 5e-11 seq120093 82.4 5e-11 >seq252726 Length=7181 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| ||| ||||||||||||| |||||||| ||||| || |||||||| Sbjct 6875 AAGCCCATTCCTTTGACTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 6934 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6935 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 6969 >seq258579 Length=20613 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||| | ||||||||||| ||||| |||||||||| |||| | || Sbjct 19181 CAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATC 19122 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 19121 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 19062 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | | ||| ||| || || | || || || Sbjct 19061 CTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATGGT 19002 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 19001 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 18966 >seq357599 Length=3490 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||| ||||||| |||||||| ||||| || |||||| | Sbjct 1326 AAGCCTGTTCCCTTGGCTGTGTTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 1267 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||||||||||| Sbjct 1266 TCATCCATTCATGTGCACCACTAATTAGATGACGA 1232 >seq393589 Length=19132 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||| | |||||||||||| ||||| ||||||||| |||| | || Sbjct 8056 CAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7997 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 7996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTC 7937 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| | | || || || Sbjct 7936 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGT 7877 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || || |||| ||| |||| ||| ||||||| Sbjct 7876 CTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq397443 Length=38993 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/86 (81%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 || ||||||||||||||| ||| |||||||| ||||| || |||||| || |||| Sbjct 31921 TTTCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCA 31980 Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989 ||||||| ||| ||||||||||||| Sbjct 31981 TTCATGCATGTCCCTAATTAGATGAC 32006 >seq411564 Length=61085 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | |||| || || || ||| || || || ||||||||||| Sbjct 40443 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 40502 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | ||||| || ||||| || || | || || |||| |||| Sbjct 40503 ATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 40562 Query 38211 --ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | |||||| || ||| || || ||||||||||| || || || | || | Sbjct 40563 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCA 40622 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || ||||||| ||| ||| |||| |||||||| Sbjct 40623 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq120093 Length=602 Score = 82.4 bits (90), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| Sbjct 458 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAATACTTGTTGACTATGGGTCTCGC 399 Query 20007 ----GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 398 TTGAGCTGGTATTTAGCTTTA 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333226794367964