Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq252726 113 3e-20
seq258579 105 4e-18
seq357599 100 2e-16
seq393589 95.1 8e-15
seq397443 84.2 1e-11
seq411564 82.4 5e-11
seq120093 82.4 5e-11
>seq252726
Length=7181
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||| ||| ||||||||||||| |||||||| ||||| || ||||||||
Sbjct 6875 AAGCCCATTCCTTTGACTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 6934
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 6935 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 6969
>seq258579
Length=20613
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||| | ||||||||||| ||||| |||||||||| |||| | ||
Sbjct 19181 CAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATC 19122
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| |||||
Sbjct 19121 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 19062
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | | ||| ||| || || | || || ||
Sbjct 19061 CTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATGGT 19002
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| ||| |||||||| |||||||| ||
Sbjct 19001 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 18966
>seq357599
Length=3490
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||| ||||||||||||||| ||||||| |||||||| ||||| || |||||| |
Sbjct 1326 AAGCCTGTTCCCTTGGCTGTGTTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 1267
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| || |||||||||||||||||
Sbjct 1266 TCATCCATTCATGTGCACCACTAATTAGATGACGA 1232
>seq393589
Length=19132
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||| | |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 8056 CAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7997
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| |||||
Sbjct 7996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTC 7937
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| |||||| | | || || ||
Sbjct 7936 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGT 7877
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316
|| || |||| ||| |||| ||| |||||||
Sbjct 7876 CTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846
>seq397443
Length=38993
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/86 (81%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963
|| ||||||||||||||| ||| |||||||| ||||| || |||||| || ||||
Sbjct 31921 TTTCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCA 31980
Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989
||||||| ||| |||||||||||||
Sbjct 31981 TTCATGCATGTCCCTAATTAGATGAC 32006
>seq411564
Length=61085
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/229 (68%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| || | ||| | |||| || || || ||| || || || |||||||||||
Sbjct 40443 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 40502
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || |||| || | ||||| || ||||| || || | || || |||| ||||
Sbjct 40503 ATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 40562
Query 38211 --ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| |||||| || ||| || || ||||||||||| || || || | || |
Sbjct 40563 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCA 40622
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || || ||||||| ||| ||| |||| ||||||||
Sbjct 40623 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671
>seq120093
Length=602
Score = 82.4 bits (90), Expect = 5e-11
Identities = 67/81 (83%), Gaps = 4/81 (5%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct 458 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAATACTTGTTGACTATGGGTCTCGC 399
Query 20007 ----GGTAATATTTAGCCTTA 20023
| | |||||||| |||
Sbjct 398 TTGAGCTGGTATTTAGCTTTA 378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333226794367964
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |