Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq366024 405 6e-108 seq404197 329 4e-85 seq327453 140 4e-28 seq418289 132 6e-26 seq196131 105 8e-18 seq400361 102 1e-16 seq265909 91.5 2e-13 >seq366024 Length=42324 Score = 405 bits (448), Expect = 6e-108 Identities = 624/890 (70%), Gaps = 3/890 (0%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||| ||| | || || || || || | || || | || ||||| || ||| Sbjct 18359 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 18300 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 || | ||| ||||| ||||| || || |||||||| || | ||| || |||| Sbjct 18299 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 18240 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||| || || | ||| ||||| || ||||| || || ||||||| ||| Sbjct 18239 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 18180 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || ||||| || || | || || || || ||||| || || Sbjct 18179 TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACT 18120 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || | || || || | ||| | | || ||| | | | ||||| || Sbjct 18119 GCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAT 18060 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || || || || ||||||| |||||||||||| ||||| | ||| |||||||| Sbjct 18059 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 18000 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 ||||| ||||| || || || || ||||| ||||| ||||| || ||||| || |||||| Sbjct 17999 GTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 17940 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 32831 ||||| |||||||| ||||| |||||||| | | | |||||||| | | | || Sbjct 17939 AAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTG 17880 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 || ||||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct 17879 TCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATA 17820 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || |||||| | | |||| || |||||||| || || ||||| | |||||| Sbjct 17819 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 17760 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 |||||||| ||||| |||||||| ||||| ||| | || || ||||| || | || || Sbjct 17759 TACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCC 17700 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 |||||||| |||||| | ||| | || | || |||||||| ||||| || ||||| Sbjct 17699 GTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 17640 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 |||||||| || |||| | ||| || |||||| | || || || | || | | Sbjct 17639 GCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCC 17580 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || | | || || || || | ||||| ||||| |||||||||| || ||||| || Sbjct 17579 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCT 17520 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || |||||||| | ||| || ||||| |||| || ||||| || ||||| Sbjct 17519 TTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 329 bits (364), Expect = 4e-85 Identities = 602/881 (68%), Gaps = 3/881 (0%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||||||| | || || || || || | || || || || ||||| || ||| Sbjct 53082 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 53023 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 || | ||| |||| ||||| || || |||||||| || | ||| || |||| Sbjct 53022 TCCAGTGAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 52963 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||| || || | ||| ||||| | |||| || || ||||||| | ||| Sbjct 52962 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAA 52903 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || |||| | ||| | || || || || ||||| || || Sbjct 52902 TTCATCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 52843 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || | ||||| | | ||| | | || ||| | | | ||||| ||| Sbjct 52842 GCATTGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 52783 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| | || || || ||||||| |||||||||||| ||||| | ||| |||||||| Sbjct 52782 ATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 52723 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 ||||| |||||||| || || | || || ||||| ||||| || ||||| || |||||| Sbjct 52722 GTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 52663 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TG 32831 ||||| |||||||| ||||| |||||||| | | | || || || | || || Sbjct 52662 AAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTG 52603 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 || | ||||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 52602 TCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATG 52543 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || |||||| | | |||| || ||||| || || || ||||| | |||||| Sbjct 52542 GCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTA 52483 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 |||||||||||||| |||||||| ||||| ||||| || || ||||| | || || Sbjct 52482 TACATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCC 52423 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 |||||||| |||||| | || || || | | |||||||| |||| |||||||| Sbjct 52422 GTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTT 52363 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 |||||| | || | || ||||| | |||||| | || || || | || | | Sbjct 52362 GCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCC 52303 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | | || || || || | ||||| || || | ||||| || || ||||| || Sbjct 52302 CGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCG 52243 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 || ||| |||| | ||| || ||| | ||| || ||||| Sbjct 52242 TTCTTACACATCTGCCAAATATCACGGTATCCGATAGGAAA 52202 >seq327453 Length=26950 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 17905 CTGTTTCTTATACCATA 17921 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || || || || | || || || |||||||| || || || || || || | Sbjct 22130 CATAGGTTTCATACGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 22189 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 22190 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 22249 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 22250 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 22307 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 26476 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 26535 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 26536 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 26595 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 26596 AGGCTCCAGGTAAATAGC 26613 >seq418289 Length=29330 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673 Query 32803 C 32803 | Sbjct 26672 C 26672 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 24796 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 24737 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | || || |||||||| |||||| Sbjct 24736 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 24691 >seq196131 Length=2042 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 1354 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCGATCCTTGCTGCCAGGA 1295 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1294 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1235 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1234 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1189 >seq400361 Length=55729 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 38540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 42770 AAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 42829 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 33160 || || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 42830 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 42885 >seq265909 Length=7629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 30443 ATCTAGATATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 30502 ||||| | ||| ||||| | | |||||| ||| |||| |||| | | || ||||| || Sbjct 2321 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 2262 Query 30503 TATTCTATCCCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCC 30562 |||| ||| || | || || | || | ||| ||| ||||| || | || || Sbjct 2261 AATTCGATCATCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 2202 Query 30563 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 30619 | | |||| ||||||||||| ||||| ||||| |||||| ||| || | |||| Sbjct 2201 AACACTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2142 Query 30620 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 30655 | || ||||| | ||||||| ||| |||||||| Sbjct 2141 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630293994942400