Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 333 3e-86
seq404197 221 1e-52
seq418289 100 3e-16
>seq366024
Length=42324
Score = 333 bits (368), Expect = 3e-86
Identities = 550/784 (70%), Gaps = 11/784 (1%)
Strand=Plus/Minus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| ||| || || || ||||| |||||||| ||||||| |||||||| || |
Sbjct 18227 ATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 18168
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| || || || || || || | ||| || | || ||| ||| || | | | |
Sbjct 18167 AGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT---TGACG 18111
Query 93038 ATT-TCTATT--ACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094
||| | |||| ||||| | | ||||| |||| | | ||| | || | |||
Sbjct 18110 ATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAG 18051
Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153
|||||||| |||||||| ||||||| || || || | ||||| ||||| | ||
Sbjct 18050 GCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCC 17992
Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213
|||| ||| |||||||| |||||||| ||||| || |||||| ||||||||| || ||
Sbjct 17991 GGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGAT 17932
Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273
|||||||| || ||||| || || | |||||| || | | || || | |||
Sbjct 17931 TCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGAT 17872
Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333
||| || |||||||| || || ||||| | |||||| | ||| || |||||||| ||
Sbjct 17871 CCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAA 17812
Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393
|| | || | || | |||||| ||||| || || || | ||| |||||||||
Sbjct 17811 GAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTC 17752
Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453
|||||||| || ||||| |||||| |||| || |||||||| | |||||||| |||||
Sbjct 17751 AGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTG 17692
Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513
|||||||| ||| ||| || | |||||||| ||||| ||||| |||||||||
Sbjct 17691 AACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAA 17632
Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGG 93572
||||||| |||||| || |||| | |||| ||| || || ||||| | | |
Sbjct 17631 GAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTG 17572
Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632
| | || || ||||| || || ||||| | |||||||| || || || ||||| || |
Sbjct 17571 A-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 17513
Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692
|||| | ||| || || || |||| || ||||| |||||||| || | ||| ||||
Sbjct 17512 ACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGCGGCGGGTGTTTTCTT 17453
Query 93693 TTAG 93696
| ||
Sbjct 17452 TCAG 17449
>seq404197
Length=65104
Score = 221 bits (244), Expect = 1e-52
Identities = 425/617 (69%), Gaps = 10/617 (2%)
Strand=Plus/Minus
Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121
||||| |||| | | ||| |||| | | | |||||||| |||||||| ||||||
Sbjct 52806 GGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCT 52747
Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180
| || || || | ||||| ||||| | || || | |||||||| ||||||||||||
Sbjct 52746 C-TGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCA 52688
Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240
||||| || |||||| ||||||||| || || |||||||| || ||||| || || |
Sbjct 52687 GAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGAC 52628
Query 93241 ACG--TTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTT 93297
||| ||| | | | || || | || |||||| || |||||||| || ||
Sbjct 52627 ACGCTTTCAG--TACCTAGC-CTCTTTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTT 52571
Query 93298 TTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATC 93357
||||| | |||||| | ||| || || ||||| || || | || | || | |||||
Sbjct 52570 CTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATC 52511
Query 93358 TCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAAT 93417
| | ||||| || || || | ||| ||||||||| ||||| | || ||||| || ||
Sbjct 52510 TTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCGAT 52451
Query 93418 TTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477
|||||| || |||||| | |||||||| ||||| |||||||| || | ||| ||
Sbjct 52450 TTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCAC 52391
Query 93478 GAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAA 93537
|| |||||||| |||| || || ||||||| | |||| || | |||| | ||
Sbjct 52390 CAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAA 52331
Query 93538 ATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTT 93596
|| | |||| ||| || || |||| | | || | || || ||||| || || |
Sbjct 52330 ATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGA-ATGTCCTTGGAAAGGTCCACCT 52272
Query 93597 CTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656
| || | ||||| || || || || || || || |||| | ||| || || | |||
Sbjct 52271 CCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATC 52212
Query 93657 GAATTGGAAATATGACA 93673
|| ||||| | ||||
Sbjct 52211 CGATAGGAAAGAAGACA 52195
>seq418289
Length=29330
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| || || || | ||| ||||||||||||||||| || |||||
Sbjct 24798 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATG 24739
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
||||||||||| || |||||||| | |||||||| ||||| ||||||||
Sbjct 24738 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 24689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553927229462560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |