Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq366024 333 3e-86 seq404197 221 1e-52 seq418289 100 3e-16 >seq366024 Length=42324 Score = 333 bits (368), Expect = 3e-86 Identities = 550/784 (70%), Gaps = 11/784 (1%) Strand=Plus/Minus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || || ||||| |||||||| ||||||| |||||||| || | Sbjct 18227 ATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 18168 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || || || || || || || | ||| || | || ||| ||| || | | | | Sbjct 18167 AGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT---TGACG 18111 Query 93038 ATT-TCTATT--ACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| | |||| ||||| | | ||||| |||| | | ||| | || | ||| Sbjct 18110 ATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAG 18051 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153 |||||||| |||||||| ||||||| || || || | ||||| ||||| | || Sbjct 18050 GCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCC 17992 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 |||| ||| |||||||| |||||||| ||||| || |||||| ||||||||| || || Sbjct 17991 GGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGAT 17932 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 |||||||| || ||||| || || | |||||| || | | || || | ||| Sbjct 17931 TCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGAT 17872 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| || |||||||| || || ||||| | |||||| | ||| || |||||||| || Sbjct 17871 CCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAA 17812 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | || | || | |||||| ||||| || || || | ||| ||||||||| Sbjct 17811 GAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTC 17752 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 |||||||| || ||||| |||||| |||| || |||||||| | |||||||| ||||| Sbjct 17751 AGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTG 17692 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 |||||||| ||| ||| || | |||||||| ||||| ||||| ||||||||| Sbjct 17691 AACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAA 17632 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGG 93572 ||||||| |||||| || |||| | |||| ||| || || ||||| | | | Sbjct 17631 GAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTG 17572 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | | || || ||||| || || ||||| | |||||||| || || || ||||| || | Sbjct 17571 A-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 17513 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692 |||| | ||| || || || |||| || ||||| |||||||| || | ||| |||| Sbjct 17512 ACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGCGGCGGGTGTTTTCTT 17453 Query 93693 TTAG 93696 | || Sbjct 17452 TCAG 17449 >seq404197 Length=65104 Score = 221 bits (244), Expect = 1e-52 Identities = 425/617 (69%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| |||| | | ||| |||| | | | |||||||| |||||||| |||||| Sbjct 52806 GGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAAGTCACAGTGTAAACCCTCGTCT 52747 Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || || | ||||| ||||| | || || | |||||||| |||||||||||| Sbjct 52746 C-TGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCA 52688 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || |||||| ||||||||| || || |||||||| || ||||| || || | Sbjct 52687 GAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGAC 52628 Query 93241 ACG--TTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTT 93297 ||| ||| | | | || || | || |||||| || |||||||| || || Sbjct 52627 ACGCTTTCAG--TACCTAGC-CTCTTTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTT 52571 Query 93298 TTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATC 93357 ||||| | |||||| | ||| || || ||||| || || | || | || | ||||| Sbjct 52570 CTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATC 52511 Query 93358 TCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAAT 93417 | | ||||| || || || | ||| ||||||||| ||||| | || ||||| || || Sbjct 52510 TTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCGAT 52451 Query 93418 TTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 |||||| || |||||| | |||||||| ||||| |||||||| || | ||| || Sbjct 52450 TTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCAC 52391 Query 93478 GAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAA 93537 || |||||||| |||| || || ||||||| | |||| || | |||| | || Sbjct 52390 CAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAA 52331 Query 93538 ATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTT 93596 || | |||| ||| || || |||| | | || | || || ||||| || || | Sbjct 52330 ATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGA-ATGTCCTTGGAAAGGTCCACCT 52272 Query 93597 CTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 | || | ||||| || || || || || || || |||| | ||| || || | ||| Sbjct 52271 CCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATC 52212 Query 93657 GAATTGGAAATATGACA 93673 || ||||| | |||| Sbjct 52211 CGATAGGAAAGAAGACA 52195 >seq418289 Length=29330 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||||| || ||||| Sbjct 24798 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATG 24739 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 24738 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 24689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553927229462560