Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq366847 89.7 4e-13 seq129591 84.2 2e-11 >seq366847 Length=8421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || | ||| || || | || || || || ||| ||||| ||||| |||| Sbjct 1624 AGATGCAGATCTGTGTGAAGACCCTGACAGGCAAGACCACCACCCTTGAGGTGGAGACCA 1683 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || || | | || |||| ||||| ||||||||||||||||| | || || | Sbjct 1684 GTGACTCCATAAAGAATGTCAAGGCCAAAATCCAAGACAAGGAGGGTATCCTGCCTGACC 1743 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || ||| |||||||||| || ||| | || |||| || ||| Sbjct 1744 AGCAGCATCTGATTTTTATGGGCAAACAGTGGGAAGATGGTAGAAC--TCTCAGACAACA 1801 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| || ||||| |||||| |||| || || Sbjct 1802 ACATCCAGAAAGAGTCCACCCTACACTTGGT 1832 >seq129591 Length=11435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | || || || |||||||||| || | || Sbjct 4668 AGATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCTCA 4727 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||| | || || ||||| ||||| |||||| |||| || | || | | Sbjct 4728 GTGTCACCATTGAGAATGTCAAAGCCAAAATCAAAGACACTGAGGACATCCTGCCACACC 4787 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| |||| || ||||| | ||||||| | |||| | ||| || |||| || || | Sbjct 4788 AACACAGTCTGATTTTTGCAGACAAACAGCT-GAGGGTGGCCGTACTCTCTCAGACTATA 4846 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || || ||||||||||||||||| || || Sbjct 4847 ATATCCAGAAAGAATCCACCATACACTTGGT 4877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417572130611860