Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq418776 145 1e-29
seq411564 143 5e-29
seq258579 127 4e-24
seq393589 113 8e-20
seq366847 113 8e-20
seq336898 107 4e-18
>seq418776
Length=96061
Score = 145 bits (160), Expect = 1e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| | || |||||||| |||||||| ||||| || || || | ||||||||
Sbjct 55087 ACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 55028
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || || || || || || | ||| || || ||||||||||| || ||
Sbjct 55027 AGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGG 54968
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| || |||||||||||| || || || |||| ||||||||| ||
Sbjct 54967 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTG 54908
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| | |||||||| ||||| ||||||||
Sbjct 54907 CNNNTCAGGGTCTTCACGAAGATCTGCAT 54879
>seq411564
Length=61085
Score = 143 bits (158), Expect = 5e-29
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||||| |||||||| ||||| || | || | || |||||
Sbjct 40461 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCC 40520
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA--ATGCCTTCCTTGTCTT 68370
| ||| || || || || ||||| || || |||||||| || ||||||||||| || |
Sbjct 40521 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCT 40580
Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430
| ||||| ||||| || || ||||||||| | || || |||| ||||||||| |
Sbjct 40581 GGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 40640
Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||| |||||||| |||| ||||||||
Sbjct 40641 TGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671
>seq258579
Length=20613
Score = 127 bits (140), Expect = 4e-24
Identities = 160/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301
|||| | ||| || | || || | |||||| ||||| | ||| || || || | | |
Sbjct 19188 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 19129
Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361
|||||||| | ||||| || || || || |||||||| ||||| || ||||| ||||
Sbjct 19128 GTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 19069
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421
||||||| || ||||| ||||| || || || | || | | ||| || || | |
Sbjct 19068 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAG 19009
Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| || ||||| |||||||| ||||| ||||||||
Sbjct 19008 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 18969
>seq393589
Length=19132
Score = 113 bits (124), Expect = 8e-20
Identities = 157/219 (72%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301
|||| | ||| || | || || | |||||| ||||| ||||| || || || | || |
Sbjct 8063 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 8004
Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361
|||||||| | ||||| || || || || |||||||| ||||| || | ||| ||||
Sbjct 8003 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTT 7944
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421
||||||| || ||||| ||||| || || || || || | ||| || | | |
Sbjct 7943 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAG 7884
Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460
|||||| | |||| || |||||||| | ||| |||||||
Sbjct 7883 TGATGG-TCTTCCTGTCAGGGTCTTCATGAAAATCTGCA 7846
>seq366847
Length=8421
Score = 113 bits (124), Expect = 8e-20
Identities = 153/210 (73%), Gaps = 4/210 (2%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
||||||||||| ||||||||||| |||||||| | || |||||| || ||||||||
Sbjct 1832 ACCAAGTGTAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGTT--CTACCATCTTCC 1775
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||| || || || || || || ||||| || | || || |||||||||||
Sbjct 1774 CACTGTTTGCCCATAAAAATCAGATGCTGCTGGTCAGGCAGGATACCCTCCTTGTCTTGG 1715
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431
|| || |||||||| || |||| ||| ||| | || || || | |||| |||| ||
Sbjct 1714 ATTTTGGCCTTGACATTCTTTATGGAGTC-ACTGGTCTCCACCTCAAGGGTGGTGGTCTT 1656
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||| || | ||||||||
Sbjct 1655 GCCTGTCAGGGTCTTCACACAGATCTGCAT 1626
>seq336898
Length=33758
Score = 107 bits (118), Expect = 4e-18
Identities = 157/221 (71%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301
|||| | || ||| | || || || ||||| ||||| ||||| || || || | || |
Sbjct 29868 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 29809
Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361
|||||||| | ||||| || || || || ||| |||| ||||| || ||||| ||||
Sbjct 29808 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTT 29749
Query 68362 CCTTGTCTTGAATCTTTGCCTTGAC-GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420
||||||| || |||| ||||| || || || || || | | ||| || || |
Sbjct 29748 CCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGA 29689
Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| | || || |||||||| | ||| ||||||||
Sbjct 29688 GTGATGGCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCAT 29648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 916767247115680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |