Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq418776 145 1e-29 seq411564 143 5e-29 seq258579 127 4e-24 seq393589 113 8e-20 seq366847 113 8e-20 seq336898 107 4e-18 >seq418776 Length=96061 Score = 145 bits (160), Expect = 1e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 55087 ACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 55028 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || || || | ||| || || ||||||||||| || || Sbjct 55027 AGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGG 54968 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || |||||||||||| || || || |||| ||||||||| || Sbjct 54967 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTG 54908 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | |||||||| ||||| |||||||| Sbjct 54907 CNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq411564 Length=61085 Score = 143 bits (158), Expect = 5e-29 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || | || | || ||||| Sbjct 40461 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCC 40520 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA--ATGCCTTCCTTGTCTT 68370 | ||| || || || || ||||| || || |||||||| || ||||||||||| || | Sbjct 40521 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCT 40580 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 | ||||| ||||| || || ||||||||| | || || |||| ||||||||| | Sbjct 40581 GGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 40640 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| |||||||| |||| |||||||| Sbjct 40641 TGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq258579 Length=20613 Score = 127 bits (140), Expect = 4e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | || || | |||||| ||||| | ||| || || || | | | Sbjct 19188 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 19129 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | ||||| || || || || |||||||| ||||| || ||||| |||| Sbjct 19128 GTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 19069 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 ||||||| || ||||| ||||| || || || | || | | ||| || || | | Sbjct 19068 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAG 19009 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || ||||| |||||||| ||||| |||||||| Sbjct 19008 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 18969 >seq393589 Length=19132 Score = 113 bits (124), Expect = 8e-20 Identities = 157/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | || || | |||||| ||||| ||||| || || || | || | Sbjct 8063 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 8004 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | ||||| || || || || |||||||| ||||| || | ||| |||| Sbjct 8003 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTT 7944 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 ||||||| || ||||| ||||| || || || || || | ||| || | | | Sbjct 7943 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAG 7884 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 |||||| | |||| || |||||||| | ||| ||||||| Sbjct 7883 TGATGG-TCTTCCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq366847 Length=8421 Score = 113 bits (124), Expect = 8e-20 Identities = 153/210 (73%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||||||| ||||||||||| |||||||| | || |||||| || |||||||| Sbjct 1832 ACCAAGTGTAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGTT--CTACCATCTTCC 1775 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||| || || || || || || ||||| || | || || ||||||||||| Sbjct 1774 CACTGTTTGCCCATAAAAATCAGATGCTGCTGGTCAGGCAGGATACCCTCCTTGTCTTGG 1715 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431 || || |||||||| || |||| ||| ||| | || || || | |||| |||| || Sbjct 1714 ATTTTGGCCTTGACATTCTTTATGGAGTC-ACTGGTCTCCACCTCAAGGGTGGTGGTCTT 1656 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || | |||||||| Sbjct 1655 GCCTGTCAGGGTCTTCACACAGATCTGCAT 1626 >seq336898 Length=33758 Score = 107 bits (118), Expect = 4e-18 Identities = 157/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | || ||| | || || || ||||| ||||| ||||| || || || | || | Sbjct 29868 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 29809 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | ||||| || || || || ||| |||| ||||| || ||||| |||| Sbjct 29808 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTT 29749 Query 68362 CCTTGTCTTGAATCTTTGCCTTGAC-GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 ||||||| || |||| ||||| || || || || || | | ||| || || | Sbjct 29748 CCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGA 29689 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| | || || |||||||| | ||| |||||||| Sbjct 29688 GTGATGGCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCAT 29648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916767247115680