Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq258579 93.3 4e-14 seq364176 91.5 1e-13 seq336898 91.5 1e-13 seq393589 82.4 6e-11 >seq258579 Length=20613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| || | |||||||| || | ||| | | || || ||||||| |||||| || Sbjct 19199 AACACCATCATGAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTC 19140 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || | |||| |||||| ||||| || || || |||| || | || ||||| || Sbjct 19139 AGACAAAATACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGG 19080 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| ||||| ||||| ||||| |||| | ||| | | || | || ||| Sbjct 19079 AGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTC 19020 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | || || || ||||| || || || ||||||||||| Sbjct 19019 GACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 18969 >seq364176 Length=18321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||||||| || | ||| | || || || |||||| |||||| || || |||||| Sbjct 5348 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGT 5407 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| ||||| || ||||| |||| || | || ||||| |||||||| ||||| Sbjct 5408 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 5467 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || ||||| |||| | ||| || || || |||||| || | || Sbjct 5468 TTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTG 5527 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || ||||| || || || ||||||||||| Sbjct 5528 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 5565 >seq336898 Length=33758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | ||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 29876 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 29817 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || || ||||| ||||| Sbjct 29816 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGG 29757 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| ||||| Sbjct 29756 AATTCCTTCCTTGTC 29742 >seq393589 Length=19132 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | | || || |||||||||||||| || Sbjct 8071 ACCACCATGAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGA 8012 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || ||||| || | Sbjct 8011 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGA 7952 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| ||||| Sbjct 7951 AATTCCTTCCTTGTC 7937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417976443199728