Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq366024 167 4e-36 seq404197 161 2e-34 seq418289 87.8 3e-12 >seq366024 Length=42324 Score = 167 bits (184), Expect = 4e-36 Identities = 565/866 (65%), Gaps = 27/866 (3%) Strand=Plus/Plus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 |||| || || ||| ||||| ||||| || || ||| ||||| || || ||| Sbjct 17492 ACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGG 17551 Query 42352 TTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACGAAAAGTT 42406 | ||||| ||||||||| | || |||||| | ||| ||||| | || | | Sbjct 17552 TGGACCTTTCCAAGGACATTCAGCA--CTGGGAAGCCCTGAAGCCTGAGGA-GAGA--TA 17606 Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466 |||| | | || ||||| ||||| || || ||| |||||||| ||||| ||| | Sbjct 17607 TTTCATTTCGCATATTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTT 17666 Query 42467 GGCC-ACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || | ||| || | |||| || ||| ||| || || || || ||||| ||||| Sbjct 17667 GGTGGAGCAGTTT-AGCCAAGAAGTTCAGATTACG--GAAGCCCGTTGTTTCTATGGCTT 17723 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 || || ||||| || ||| | || ||||| |||| | || |||| |||| || Sbjct 17724 CCTAATTGCCATGGAAAACATCCATTCTGAAATGTAT---AGTCTCCTCATTGACACTTA 17780 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 ||| ||| || || | | || ||||| || || ||||| ||||| || | Sbjct 17781 CATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGCCTTGTGT 17840 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 ||||||||||| || ||||| | |||||||| | || || |||| || || Sbjct 17841 AAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAGGCTACGTATGGAGA 17900 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | ||||||||| | || || || || |||||||| || || | || || || || Sbjct 17901 ACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGAT 17960 Query 42761 CTTCTGGCTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||| || | |||| | ||| ||||| ||||| || || || ||||| || | Sbjct 17961 ATTCTGGCTCAAAAAACGAGGTCT-GATACCCGGCCTCACATTTTCCAATGAACTTATTA 18019 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 |||| |||||||| | || | |||||||||||||| | ||| | ||||| | Sbjct 18020 GCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATATTC---AAACACCTGCTAC 18076 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||| || ||| || || | ||| || ||| | || || || || ||| Sbjct 18077 ACAAACCTTCGGAGCAGAGAGTCAAATAAATAATCGTCAATGCAGTTAGAATAGAACAGG 18136 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||||||||| | | ||||| ||| || | || ||||| | | ||| Sbjct 18137 AGTTCCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGC 18196 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACA 43059 |||||||| | | ||| || ||| || || | || ||||| | ||| | | || Sbjct 18197 AGTACATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGTTTTCA 18256 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 || || |||||||||||||| || || |||| || ||||| ||||| | Sbjct 18257 GAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCT 18316 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| | || | ||| || ||| Sbjct 18317 CTGAGAAGAGAGTAGGCGAGTATCAG 18342 >seq404197 Length=65104 Score = 161 bits (178), Expect = 2e-34 Identities = 465/709 (66%), Gaps = 15/709 (2%) Strand=Plus/Plus Query 42443 TGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTT 42500 ||||||| |||| ||||| ||||||| || | | |||| || ||| ||| Sbjct 52366 TGACGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGTTCAGATTACG-- 52423 Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 || || | | ||||| |||||||| || ||||| || ||| | || || || |||| Sbjct 52424 GAAGCCCATTATTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAAATGTAT 52483 Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAG 42617 | || |||| |||| ||||| | ||| || || | | || ||||| Sbjct 52484 ---AGTCTCCTCATTGACACTTACATTCAAGATTCCAAAGAAAGGGAATTTCTCTTCAAC 52540 Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||||| ||||| ||||| || | ||||||||||| || ||||| | |||||||||| Sbjct 52541 GCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAG 52600 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 || || | || | | || | | ||||||||| |||| || || || |||||| Sbjct 52601 GACAAAGAGGCTAGGTACTGAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTC 52660 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACT 42796 || || || | || || || || |||||||||||| | ||| | ||||||||| || Sbjct 52661 TTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAATGAGGACT-GATGCCCGGCCT 52719 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 ||| || || || ||||| || ||||| |||||||| | || | |||||||||| ||| Sbjct 52720 CACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTTCCT 52779 Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCAC 42916 ||||| | ||||| ||||| || ||| || || | ||| | || ||| Sbjct 52780 GATGTTC---AAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGAAATTATCGT 52836 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGG 42976 | || || ||| || |||||||||||||| || | | | | ||| || | || Sbjct 52837 CAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTGAAGCTCATTGG 52896 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCA 43036 ||||| || | ||| |||||||| | | | | || ||| || || | Sbjct 52897 GATGAATTGCGCTTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGA 52956 Query 43037 GATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTC 43096 | ||||| | ||| | | || || || |||||||||||||| | || Sbjct 52957 GCTGGGTTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATAGTTC 53016 Query 43097 GTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| || ||||| ||||| || |||||| | || | ||| || ||| Sbjct 53017 ACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAG 53065 >seq418289 Length=29330 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || |||||||| || || | || || || || |||||| Sbjct 26669 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 26728 Query 42768 CTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| || | |||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 26729 CTCAAAAAACGAGGTCT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 26787 Query 42827 CGAGG 42831 ||||| Sbjct 26788 CGAGG 26792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939364373877440