Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 203 3e-47
seq273439 100 2e-16
seq397969 89.7 5e-13
>seq397970
Length=5258
Score = 203 bits (224), Expect = 3e-47
Identities = 425/631 (67%), Gaps = 7/631 (1%)
Strand=Plus/Minus
Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250
||| ||||| ||||||||||| ||||| | ||| || || || | || || || | ||
Sbjct 2224 GTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 2165
Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310
|| | ||| || |||| |||||||| ||||| || || || |||| |||||
Sbjct 2164 TGCGATCATGTAGC-----AGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCAT 2110
Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370
||||| |||||||| |||||||| ||||| |||||||||| | || || || || ||
Sbjct 2109 ATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 2050
Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430
| ||| || || || || ||||| | | | || || ||||| |||||||
Sbjct 2049 AAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAG 1990
Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCA-CAATGTACGACAATTGGT 20489
||||||||||| |||| || || |||| ||| || || | | | || ||| |
Sbjct 1989 GATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTG-CAGTTGAT 1931
Query 20490 CAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCC 20549
| | || || ||| ||| || | |||| || ||| | |||||||| |||||||
Sbjct 1930 CTACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCC 1871
Query 20550 ACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGG 20609
|||| || || ||||| || || |||||||| || |||| | | || | | |
Sbjct 1870 ACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGT 1811
Query 20610 CCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCC 20669
||| ||| || | ||| ||||| ||||| || || ||||| | || ||||||
Sbjct 1810 CCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCT 1751
Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729
| | || || ||||| | |||||| |||| ||| | | || || || || |
Sbjct 1750 TAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAA 1691
Query 20730 CCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAA 20789
| || || || || || | ||||| | || | ||| || || | ||||||||||| |
Sbjct 1690 CACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGA 1631
Query 20790 ATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820
| | || |||||||| |||| ||||||||
Sbjct 1630 ACACCGACAGGGTGCCGGTGCCCGTGCGGTC 1600
>seq273439
Length=4507
Score = 100 bits (110), Expect = 2e-16
Identities = 117/157 (75%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250
||| ||||| ||||||||||| ||||| | | | || || || | || || || | ||
Sbjct 2398 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2339
Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310
|| | ||| || || | |||| ||||||||| | ||| || | || |||| ||| |
Sbjct 2338 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 2279
Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCA 20347
|||||| |||||||| |||||||| ||||| ||||||
Sbjct 2278 GTCTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCA 2243
>seq397969
Length=7843
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| || | ||| || || | |||| |||||||| ||||| || || || |||| |||
Sbjct 7700 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 7641
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
|||||||| |||||||| ||||||| ||||| |||||||||| | || || || ||
Sbjct 7640 ATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 7581
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397
|| | ||| || || || || |||||
Sbjct 7580 CAAAGGGCGTGGCACGGGGGTAGGGCCAT 7552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 439047626020960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |