Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq397970 203 3e-47 seq273439 100 2e-16 seq397969 89.7 5e-13 >seq397970 Length=5258 Score = 203 bits (224), Expect = 3e-47 Identities = 425/631 (67%), Gaps = 7/631 (1%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | ||| || || || | || || || | || Sbjct 2224 GTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 2165 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || |||| |||||||| ||||| || || || |||| ||||| Sbjct 2164 TGCGATCATGTAGC-----AGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCAT 2110 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 ||||| |||||||| |||||||| ||||| |||||||||| | || || || || || Sbjct 2109 ATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 2050 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 | ||| || || || || ||||| | | | || || ||||| ||||||| Sbjct 2049 AAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAG 1990 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCA-CAATGTACGACAATTGGT 20489 ||||||||||| |||| || || |||| ||| || || | | | || ||| | Sbjct 1989 GATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTG-CAGTTGAT 1931 Query 20490 CAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCC 20549 | | || || ||| ||| || | |||| || ||| | |||||||| ||||||| Sbjct 1930 CTACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCC 1871 Query 20550 ACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGG 20609 |||| || || ||||| || || |||||||| || |||| | | || | | | Sbjct 1870 ACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGT 1811 Query 20610 CCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCC 20669 ||| ||| || | ||| ||||| ||||| || || ||||| | || |||||| Sbjct 1810 CCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCT 1751 Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729 | | || || ||||| | |||||| |||| ||| | | || || || || | Sbjct 1750 TAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAA 1691 Query 20730 CCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAA 20789 | || || || || || | ||||| | || | ||| || || | ||||||||||| | Sbjct 1690 CACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGA 1631 Query 20790 ATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 | | || |||||||| |||| |||||||| Sbjct 1630 ACACCGACAGGGTGCCGGTGCCCGTGCGGTC 1600 >seq273439 Length=4507 Score = 100 bits (110), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | | | || || || | || || || | || Sbjct 2398 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2339 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || || | |||| ||||||||| | ||| || | || |||| ||| | Sbjct 2338 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 2279 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCA 20347 |||||| |||||||| |||||||| ||||| |||||| Sbjct 2278 GTCTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCA 2243 >seq397969 Length=7843 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 7700 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 7641 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||||||| ||||||| ||||| |||||||||| | || || || || Sbjct 7640 ATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 7581 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| || || || || ||||| Sbjct 7580 CAAAGGGCGTGGCACGGGGGTAGGGCCAT 7552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439047626020960