Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq364176 127 5e-24 seq359707 113 1e-19 seq418776 109 1e-18 seq356745 104 5e-17 seq411564 102 2e-16 seq331670 96.9 8e-15 >seq364176 Length=18321 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||| | ||||| | || ||||||| ||| || ||||| | || | ||| | Sbjct 5339 CCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGAC 5398 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 5399 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 5455 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||| | | ||| | ||| Sbjct 5456 GGAATTCCTTCCTTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCG 5515 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 5516 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 5565 >seq359707 Length=5412 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| | || || | | ||| | || ||||| | ||||| ||||| ||| Sbjct 2602 TCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAG 2661 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || |||||||| Sbjct 2662 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 2721 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | || || || || || || || ||||| ||||| || |||| ||||| ||| Sbjct 2722 TTGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 2781 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 2782 AAGATCTGCATTTTG 2796 >seq418776 Length=96061 Score = 109 bits (120), Expect = 1e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||| || ||||| | ||||| ||||| ||| Sbjct 55069 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAG 55010 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| | | ||||| ||||| ||||||||||| || || ||||| || Sbjct 55009 ATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 54950 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || || ||||| ||||| | |||| ||||| ||| Sbjct 54949 TCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACG 54890 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 54889 AAGATCTGCAT 54879 >seq356745 Length=38052 Score = 104 bits (114), Expect = 5e-17 Identities = 143/195 (73%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGG-CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 || ||||| || || ||||| | ||| || | || || || | ||| || || || || Sbjct 19856 TCCTTTTGAATGTTGTAGTCAGACGAA-GTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 19914 Query 288342 GATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | |||| | || | ||||||||||||||||||||||| || || || || Sbjct 19915 GATCAGTCTTTGCTGGTTAGGA---GGGATTCCTTCTTTATCCTGGATCTTGGCCTTTAC 19971 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||| | ||| | ||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 19972 ATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTT 20030 Query 288459 GACGAATATCTGCAT 288473 | ||| |||||||| Sbjct 20031 CATGAAAATCTGCAT 20045 >seq411564 Length=61085 Score = 102 bits (112), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | ||||| |||||||| | ||||| ||||| ||| Sbjct 40479 TCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAG 40538 Query 288343 ATCAGACGCTGTTGA--GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| | Sbjct 40539 ATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACAT 40598 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | | || | || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 40599 TCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCC 40658 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 40659 CGAAGATCTGCAT 40671 >seq331670 Length=23129 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| ||||| ||| Sbjct 21992 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAAG 22051 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG-TT 288401 | || | ||| || | | ||||| ||||||||||||||||| || || | || | Sbjct 22052 AGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTGGCATCCAGGACA 22111 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||| | || || | || || || || ||||| ||||| | |||||| ||||| | Sbjct 22112 TTCT-CGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCAT 22170 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 22171 GAAGATCTGCAT 22182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173284559679032