Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq364176 111 2e-19 seq411564 109 5e-19 seq258579 107 2e-18 seq418776 96.9 3e-15 seq393589 96.9 3e-15 seq331670 95.1 1e-14 seq336898 93.3 4e-14 seq356745 84.2 2e-11 seq414080 82.4 8e-11 >seq364176 Length=18321 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||| | | ||| | ||| ||||||| || || || |||||| |||||| || | Sbjct 5338 ACCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGA 5397 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | |||||||| ||||| Sbjct 5398 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 5457 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || |||||| || |||||| || || || Sbjct 5458 AATTCCTTCCTTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGAC 5517 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 5518 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 5568 >seq411564 Length=61085 Score = 109 bits (120), Expect = 5e-19 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| ||||||| ||||| ||||| Sbjct 40473 GTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCT 40532 Query 64307 GCATAAATGAGCCGCTGCTGGTC--GGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCT 64364 ||| | ||||||| ||||||||| ||| || || ||||| || || || || || || Sbjct 40533 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 40592 Query 64365 TTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 | ||| || | || |||| || ||||| || | || | ||||||||| |||| | Sbjct 40593 TCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGG 40652 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || |||| || ||||| Sbjct 40653 TCTTCCCGAAGATCTGCAT 40671 >seq258579 Length=20613 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| | || || ||||||| |||||| || | | | || | Sbjct 19184 TCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCC 19125 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 19124 ATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 19065 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | || ||| || || || || | ||| | Sbjct 19064 GTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGAT 19005 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || |||| || || |||||||| ||||| || Sbjct 19004 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 18966 >seq418776 Length=96061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | |||| | ||||| ||||| ||||| Sbjct 55075 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCT 55016 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||| ||| || || || ||||| || || || || || ||| Sbjct 55015 GCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 54956 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||| ||| || Sbjct 54955 ACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTC 54896 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 54895 TTCACGAAGATCTGCAT 54879 >seq393589 Length=19132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| | || || |||||||||||||| || | | || || | Sbjct 8059 TCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 8000 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| || | ||||||||| || Sbjct 7999 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTT 7940 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | |||||| || || || | | ||| | Sbjct 7939 GTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGAT 7880 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCA 64442 |||||| || |||| || || | |||||| |||| Sbjct 7879 GGTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq331670 Length=23129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| | ||| ||||| Sbjct 21986 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCT 22045 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | | ||||| ||||||||| | || || |||||||| || || || || | Sbjct 22046 GCAAAGAGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTGGCATCC 22105 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 | || | | | || |||| || ||||| || | || | |||||||| ||||| || Sbjct 22106 AGGACATTCTCGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTC 22165 Query 64427 TTTACGAAAATTTGCAT 64443 || | ||| || ||||| Sbjct 22166 TTCATGAAGATCTGCAT 22182 >seq336898 Length=33758 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || |||||||||||||| || | | || || | ||||| Sbjct 29857 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 29798 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| | || || |||||||| |||||||||||||| || || || Sbjct 29797 AGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 29738 Query 64355 ATTTTTTGCTTTACA-ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | || ||||||| || | |||||| || || || || | ||| | || | | Sbjct 29737 CTCTTGGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGCCAT 29678 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || |||| || || | |||||| ||||| || Sbjct 29677 CCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 29645 >seq356745 Length=38052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTG-CGACGGTGCGCGCGTCTTCAAGCTGCTTGC 64304 ||| || || |||||||||||||| || | ||| | || | || || || ||||||| Sbjct 19849 CGTGGACTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGC-CATCCTCCAGTTGCTTGC 19907 Query 64305 CGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCT 64364 | ||| | || || | ||||||| ||||| ||||||||||| || || || || || Sbjct 19908 CAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCT 19967 Query 64365 TTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 ||||| || | |||||| | || || | | ||| | |||||| || |||| | Sbjct 19968 TTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGG 20026 Query 64425 TTTTTACGAAAATTTGCATTTT 64446 | || | |||||| ||||| || Sbjct 20027 TCTTCATGAAAATCTGCATCTT 20048 >seq414080 Length=5684 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 64237 TAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAG 64296 |||||||| || || || |||||||||||||| || | || | | ||||| || Sbjct 4726 TAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAG 4671 Query 64297 CTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 |||||||| ||| | || || | |||||||| |||||||||||||| || || || || Sbjct 4670 TTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGAT 4611 Query 64357 TTTTTGCTTTACA 64369 || ||||||| Sbjct 4610 CTTGACCTTTACA 4598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497012646211360