Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq258579 84.2 2e-11 seq364176 82.4 5e-11 >seq258579 Length=20613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC 15020 ||| || || | |||||| | || || ||||| | |||||| || | ||| | | Sbjct 19184 TCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCC 19125 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 ||||| | ||| ||||| || | |||| | || ||||| |||||||||||||| Sbjct 19124 ATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 19065 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 ||| || ||| |||||| ||||||| | ||| ||| || || | || || Sbjct 19064 GTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGAT 19005 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || || ||||| || || || ||||| |||||||| Sbjct 19004 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 18966 >seq364176 Length=18321 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| || || || ||||| |||||| || Sbjct 5339 CCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGAC 5398 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || ||||| ||| Sbjct 5399 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 5458 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | ||||| ||| || Sbjct 5459 ATTCCTTCCTTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACC 5518 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || || ||||| |||||||| Sbjct 5519 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 5568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355556310047540