Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq245831 221 2e-52 seq407932 170 3e-37 seq231592 109 8e-19 >seq245831 Length=393 Score = 221 bits (244), Expect = 2e-52 Identities = 247/330 (75%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 9702 AATGTTAATGGTTTCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACC 9761 ||| ||||| ||||| || | | || || | | | || || |||| |||||| || | Sbjct 381 AATCTTAATAGTTTCTCCTATCAGTATCAGCCTACTCGTCTGGAACAGCTGCTCATCGTC 322 Query 9762 CCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATAT 9821 |||||| || || || ||||| || ||||| || || ||||| ||||| | |||||| || Sbjct 321 CCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAGCCAAAT 262 Query 9822 GGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 |||||||||||||| | ||| ||||| | |||||| ||||| | |||||| ||||| || Sbjct 261 TGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCCTGCCCCACAGCAAACCG 202 Query 9882 CAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGG 9941 ||| | || || || | || | || | ||| | ||||| || |||||||| ||||| Sbjct 201 CAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGAGTATCTTTGACTGTGGG 142 Query 9942 GGGATACATTTCACCGTCAATAACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAG 10001 |||||||| || || |||| | |||||| ||||| || |||||||| | || ||||| Sbjct 141 AGGATACATCTCGCCACCAATTATCTGATATTTCATTTTTCCATCCTTTGAAAGGCGCAG 82 Query 10002 CTTATGCTGCTTCTCCAACGTTTCGCCGTA 10031 |||||||| ||||||| | ||| || || Sbjct 81 TTTATGCTGTCTCTCCAAAGATTCACCATA 52 >seq407932 Length=7429 Score = 170 bits (188), Expect = 3e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || ||||||| |||||| || ||||||| || || || ||||| || ||||| || || Sbjct 6032 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 5973 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| ||||| | |||||| || |||||||||||||| | ||| ||||||| |||||| Sbjct 5972 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 5913 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | |||||| ||||| ||||| | || || || | || | || | ||| | Sbjct 5912 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 5853 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| |||||||| || || |||| Sbjct 5852 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAAT 5809 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | || Sbjct 4987 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 4928 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 4927 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 4868 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || ||||| ||||||| | | ||||||| || || Sbjct 4867 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAG 4811 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| ||| ||| || Sbjct 4379 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 4320 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGC 10486 |||||||| || || ||||| ||||||||||| || |||| Sbjct 4319 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGC 4280 >seq231592 Length=10868 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || ||||| | || ||||| || ||||| | ||||||||| Sbjct 8355 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTAC 8296 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || ||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 8295 TCCGGAGAACAGATAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 8236 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 8235 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 8177 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 8176 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 8117 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 8116 TCCTACAAG 8108 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 9490 AGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAA 9549 || ||||| ||||| | | ||| || | ||| | || ||| | ||| | || || Sbjct 1858 AGCATGGAGGTGTTGAACAGGAACTGCTTGTAGCTGTAGTTCTGGGGGCCCACCCGGAAG 1799 Query 9550 TCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTC 9609 || |||| || | |||||| |||||||| |||||||| || |||||||| Sbjct 1798 GAGTCGGGCATGAGTGGGTGCCAGTGGTAGAGGTGGTTGAACTCCATGGCAATTCGGTTA 1739 Query 9610 TGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||||| || ||| || ||||| | |||||||||||| | |||| | | ||| Sbjct 1738 CGGTACTGGAACTGGGTGCCTAACAGCAGCTCCGGGTCAAACTTGAGCTTCAGGAAGTAG 1679 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGA 9727 || || || ||||| || |||| ||| | ||| || ||||| ||||| | |||| Sbjct 1678 CCACTCAGCTGCTGCACGTACTCCTCGATCACAATCTTGATGGTCTCCCCTGGGATGA 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719915364709600