Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq245831 221 2e-52
seq407932 170 3e-37
seq231592 109 8e-19
>seq245831
Length=393
Score = 221 bits (244), Expect = 2e-52
Identities = 247/330 (75%), Gaps = 0/330 (0%)
Strand=Plus/Minus
Query 9702 AATGTTAATGGTTTCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACC 9761
||| ||||| ||||| || | | || || | | | || || |||| |||||| || |
Sbjct 381 AATCTTAATAGTTTCTCCTATCAGTATCAGCCTACTCGTCTGGAACAGCTGCTCATCGTC 322
Query 9762 CCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATAT 9821
|||||| || || || ||||| || ||||| || || ||||| ||||| | |||||| ||
Sbjct 321 CCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAGCCAAAT 262
Query 9822 GGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881
|||||||||||||| | ||| ||||| | |||||| ||||| | |||||| ||||| ||
Sbjct 261 TGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCCTGCCCCACAGCAAACCG 202
Query 9882 CAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGG 9941
||| | || || || | || | || | ||| | ||||| || |||||||| |||||
Sbjct 201 CAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGAGTATCTTTGACTGTGGG 142
Query 9942 GGGATACATTTCACCGTCAATAACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAG 10001
|||||||| || || |||| | |||||| ||||| || |||||||| | || |||||
Sbjct 141 AGGATACATCTCGCCACCAATTATCTGATATTTCATTTTTCCATCCTTTGAAAGGCGCAG 82
Query 10002 CTTATGCTGCTTCTCCAACGTTTCGCCGTA 10031
|||||||| ||||||| | ||| || ||
Sbjct 81 TTTATGCTGTCTCTCCAAAGATTCACCATA 52
>seq407932
Length=7429
Score = 170 bits (188), Expect = 3e-37
Identities = 172/224 (77%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| ||||||| |||||| || ||||||| || || || ||||| || ||||| || ||
Sbjct 6032 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 5973
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| ||||| | |||||| || |||||||||||||| | ||| ||||||| ||||||
Sbjct 5972 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 5913
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
||||| | |||||| ||||| ||||| | || || || | || | || | ||| |
Sbjct 5912 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 5853
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
||||| || |||||||| ||||| |||||||| || || ||||
Sbjct 5852 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAAT 5809
Score = 107 bits (118), Expect = 3e-18
Identities = 130/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | ||
Sbjct 4987 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 4928
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||||||||||||
Sbjct 4927 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 4868
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || | || | | || ||||| ||||||| | | ||||||| || ||
Sbjct 4867 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAG 4811
Score = 86.0 bits (94), Expect = 9e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||||| ||| || ||||| ||| ||| ||
Sbjct 4379 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 4320
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGC 10486
|||||||| || || ||||| ||||||||||| || ||||
Sbjct 4319 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGC 4280
>seq231592
Length=10868
Score = 109 bits (120), Expect = 8e-19
Identities = 175/249 (70%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || | || ||||| | || ||||| || ||||| | |||||||||
Sbjct 8355 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTAC 8296
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || ||||| ||| | | ||| || || | |||||| |||||||| | ||
Sbjct 8295 TCCGGAGAACAGATAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 8236
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | || || | || | |||| | |||
Sbjct 8235 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 8177
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || |||| ||| ||||| || | |||||||| || || |||||||||||
Sbjct 8176 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 8117
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 8116 TCCTACAAG 8108
Score = 87.8 bits (96), Expect = 3e-12
Identities = 162/238 (68%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 9490 AGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAA 9549
|| ||||| ||||| | | ||| || | ||| | || ||| | ||| | || ||
Sbjct 1858 AGCATGGAGGTGTTGAACAGGAACTGCTTGTAGCTGTAGTTCTGGGGGCCCACCCGGAAG 1799
Query 9550 TCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTC 9609
|| |||| || | |||||| |||||||| |||||||| || ||||||||
Sbjct 1798 GAGTCGGGCATGAGTGGGTGCCAGTGGTAGAGGTGGTTGAACTCCATGGCAATTCGGTTA 1739
Query 9610 TGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
||||||| || ||| || ||||| | |||||||||||| | |||| | | |||
Sbjct 1738 CGGTACTGGAACTGGGTGCCTAACAGCAGCTCCGGGTCAAACTTGAGCTTCAGGAAGTAG 1679
Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGA 9727
|| || || ||||| || |||| ||| | ||| || ||||| ||||| | ||||
Sbjct 1678 CCACTCAGCTGCTGCACGTACTCCTCGATCACAATCTTGATGGTCTCCCCTGGGATGA 1621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 719915364709600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |