Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq258579 143 6e-29 seq364176 131 4e-25 seq393589 127 5e-24 seq336898 120 7e-22 seq359707 107 4e-18 seq411564 105 2e-17 seq397823 105 2e-17 seq414080 104 5e-17 seq168090 104 5e-17 seq418776 100 7e-16 seq356745 95.1 3e-14 seq363762 89.7 1e-12 seq233743 89.7 1e-12 >seq258579 Length=20613 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || |||| ||||||||||| ||||||||||||| |||| | | Sbjct 19188 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 19129 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | |||||||| ||| |||||||| Sbjct 19128 GTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 19069 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || ||| | | || | | ||| || || | | Sbjct 19068 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAG 19009 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| ||||| || || ||||| ||||| || Sbjct 19008 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 18972 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 200930 aaaaaCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | | |||| | || ||||||| Sbjct 19090 AAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGACGTATTTTGTCTGACTACAACG 19149 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 201028 | || || ||||| ||||||| ||||| |||||||||| Sbjct 19150 TTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACTTC 19188 >seq364176 Length=18321 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||| | Sbjct 5346 GAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTAC 5405 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | |||||||| ||| |||||||| Sbjct 5406 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 5465 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| || || ||| || || | ||| || || | | Sbjct 5466 CCTTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAG 5525 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| ||||| || || ||||| ||||| || Sbjct 5526 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 5562 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 200930 aaaaaCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | |||||| | || ||||| Sbjct 5444 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCACAACA 5385 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 201028 || || ||||| |||||||| ||||| |||||||||| Sbjct 5384 CTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTC 5346 >seq393589 Length=19132 Score = 127 bits (140), Expect = 5e-24 Identities = 159/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || |||| ||||||||||| | ||||||||||| |||||| | Sbjct 8063 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 8004 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | |||||||| || ||||||||| Sbjct 8003 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTT 7944 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || ||| | || || | ||| || | | | Sbjct 7943 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAG 7884 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| || || || || |||| ||||| || Sbjct 7883 TGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCTG 7848 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 200930 aaaaaCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 7965 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 8024 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 201028 | || || ||||| ||||||| ||||| |||||||||| Sbjct 8025 TTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACTTC 8063 >seq336898 Length=33758 Score = 120 bits (132), Expect = 7e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||| | Sbjct 29868 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 29809 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || |||||||| ||| |||||||| Sbjct 29808 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTT 29749 Query 199530 C 199530 | Sbjct 29748 C 29748 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 200930 aaaaaCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 29770 AAACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 29829 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 201028 | || || |||||||||||||| ||||| ||||||||| Sbjct 29830 TTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACTTC 29868 >seq359707 Length=5412 Score = 107 bits (118), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| | |||| |||| ||| |||||| Sbjct 2581 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCATCT 2640 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || |||||||| | ||||||||| || || |||||| ||| Sbjct 2641 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 2700 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| | || |||||| | | || || |||| ||||| ||| Sbjct 2701 TGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTC 2760 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || | || ||||| || || || |||||| Sbjct 2761 TTGCCAGTCAAGGTCTTCACGAAGATCTG---CATTTT 2795 >seq411564 Length=61085 Score = 105 bits (116), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||| |||| | ||| | || ||| Sbjct 40458 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCT 40517 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC--CGGAAAAATTCCTTCTCGCT 199535 |||||||| || || || |||||||| | ||||||||| || || ||||| | Sbjct 40518 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTAT 40577 Query 199536 CCTGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||| ||||| |||||| |||| || |||||| | | || || |||| ||||| Sbjct 40578 CCTGGATCTTGGCCTTCAC--ATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 40635 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||| | || || || Sbjct 40636 GGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTG 40668 >seq397823 Length=5921 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| | ||| || ||||| ||||||||||| ||||||||||| |||||| Sbjct 1673 CGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGTA 1732 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || || || | | ||||||| | | |||| || Sbjct 1733 CGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCCTTGCTGGTTAGAAGGAATTACT 1792 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || || ||| || || | | ||| || || | Sbjct 1793 TCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGA 1852 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || | ||||||||||| || Sbjct 1853 GTGATGGTCTTCCCTGTCAGGATCTTCACAAAAATCTG 1890 >seq414080 Length=5684 Score = 104 bits (114), Expect = 5e-17 Identities = 108/140 (77%), Gaps = 9/140 (6%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACA---AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA 199465 |||||||||| ||| || || ||||| ||||||||||| | |||||||||| || Sbjct 4741 CGAAGTCTCA--ACATTTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA----AA 4688 Query 199466 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATT 199525 || | |||||||||||| ||||| || || ||||| || | |||||||| ||| |||| Sbjct 4687 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 4628 Query 199526 CCTTCTCGCTCCTGAATCTT 199545 ||||| ||||| ||||| Sbjct 4627 CCTTCCTTATCCTGGATCTT 4608 >seq168090 Length=9538 Score = 104 bits (114), Expect = 5e-17 Identities = 169/237 (71%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 199397 TAAAATATTT----ATCGAAGT-CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGT 199451 ||||||||| ||| |||| | |||||| |||| || |||||||| || |||| || Sbjct 8474 TAAAATATTGTCTGATC-AAGTGCCCAGGACCTGGTGCAGGGTCGACTCTTTCTGGATGT 8532 Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||| |||| | ||| ||||||||||| ||||| || || |||||||| | ||||| Sbjct 8533 TGTGATCAGAAAGAGTGTGGCCATCTTCCAGATGCTTGCCTGCAAAGATGAGCCTCTGCT 8592 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTC--GACGGTGTC 199569 || ||| | || ||||| ||||| ||||| |||||| |||| || | |||| Sbjct 8593 -GTTCGGGAGGATGCCTTCCTCATCCTGGATCTTGGCCTTCAC--ATTCCTGATGATGTC 8649 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | ||||| |||| ||||| ||||| | || | || ||||| || ||||| Sbjct 8650 ACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGTCAACGTCTTCACGAAGATTTG 8706 >seq418776 Length=96061 Score = 100 bits (110), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| | || ||||| || |||| |||||| |||| | ||| | |||||| Sbjct 55090 AGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 55031 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| || | ||||| ||| || || ||||| ||| Sbjct 55030 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCC 54971 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 54970 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTC 54911 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | | || || ||||| || || || Sbjct 54910 TTGCNNNTCAGGGTCTTCACGAAGATCTG 54882 >seq356745 Length=38052 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||| | ||||||||||| | |||| ||||| ||||| ||||| || Sbjct 19850 GTGGACTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCCA 19909 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| || | ||||||| ||| ||||||||| ||||| ||||| ||| Sbjct 19910 GCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTT 19969 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | || |||| | ||| || | | ||||| ||||| || || || || Sbjct 19970 ACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTC 20028 Query 199613 TTCACAAAAATTTG 199626 |||| ||||| || Sbjct 20029 TTCATGAAAATCTG 20042 >seq363762 Length=31867 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 10316 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 10375 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||||| ||| ||||||| Sbjct 10376 TCAGTCTTTGCTGGTCAGGAGGAATTCCT 10404 >seq233743 Length=26381 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| | |||| |||| | ||| | || ||| Sbjct 21229 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGCTGTAATCAGAAAGAGTGCGGCCGTCT 21170 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || |||||||| | |||||| || || || |||||| ||| Sbjct 21169 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGGGGGATGCCTTCTTTATCC 21110 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 | |||||| ||||| | | || |||||| Sbjct 21109 TCAATCTTGGCCTTCATGTTCTTGATGGTGTC 21078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1172555716616748