Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq366024 289 3e-73 seq404197 271 8e-68 seq359707 109 5e-19 seq411564 105 7e-18 seq418776 89.7 5e-13 seq331670 89.7 5e-13 seq233743 86.0 6e-12 >seq366024 Length=42324 Score = 289 bits (320), Expect = 3e-73 Identities = 641/954 (67%), Gaps = 17/954 (2%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGCAAAC-----ATCACGCCAAATT 132604 || ||||| |||||||| ||||||| | || || || || ||||| | | Sbjct 18401 TAGAAGTCAGCATCCAAGGTAAAGGAATTCTC--TGTCAGACTGGACATCACTCTCATCC 18344 Query 132605 TTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCG 132664 | ||||| ||||| || | |||||| | || ||||| || || |||| ||||| | Sbjct 18343 TCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 18284 Query 132665 TCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCA 132724 |||||| || || || || || || | |||| | ||| || | | Sbjct 18283 CCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAA 18224 Query 132725 GCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGAC 132784 | ||||| |||||||| |||||||| ||| ||| |||||| | || | || Sbjct 18223 GTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCT 18164 Query 132785 GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844 ||| ||||| || || ||||| || || || || || || | | || |||| Sbjct 18163 TCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTT 18104 Query 132845 CCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGT 132904 | || | | | | || || | || || ||||| |||| ||| ||||||| Sbjct 18103 ATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAGT 18044 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 | || || || |||||||| ||| ||| ||||| ||| || || | |||||| || | Sbjct 18043 CACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTATCA 17984 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 | || |||||||||||||| ||||| | || ||| || |||||||||| || || | Sbjct 17983 GACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCA 17924 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084 | || || || || || | || || || |||| || |||||| ||||||||| || Sbjct 17923 CTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCACA 17864 Query 133085 GCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 ||||| || ||||| |||||| || || ||||| || || || ||||| || | | Sbjct 17863 AGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCAATAGCGTTGAAGAGA--- 17808 Query 133144 AGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAG 133200 | || | ||| |||| | ||| ||||| |||||| ||||||||| || Sbjct 17807 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAA 17748 Query 133201 TGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACT 133260 || | ||| |||||||| ||| | ||||| || || || || || || | ||| ||| Sbjct 17747 TGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACT 17688 Query 133261 TCTTGAGCGAAAC-GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAA 133319 ||||| || |||| |||| |||| ||||| || || ||||| || || || || || || Sbjct 17687 TCTTG-GCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 17629 Query 133320 GGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGT 133379 ||||| | ||| ||||||| | ||| | |||| | ||||||| | | Sbjct 17628 AGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAAT 17569 Query 133380 GTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||||| ||||||||||| || | |||||||| || ||||| ||||| || ||||| Sbjct 17568 GTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 17509 Query 133440 ACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 ||| || || |||| || ||||| || ||||| ||||||| |||||| Sbjct 17508 CTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGCGGCGGGTGTTTTC 17455 >seq404197 Length=65104 Score = 271 bits (300), Expect = 8e-68 Identities = 638/954 (67%), Gaps = 23/954 (2%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGG-------TGTCGTCCTTGGCAAACATCACGCCAAA 132602 || ||||| |||||||| ||||||| ||||| || | ||||||| || | Sbjct 53124 TAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGG----ACATCACTCCCAT 53069 Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 | ||||| ||||| || | |||||||| || ||||| || || |||| ||| | Sbjct 53068 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATT 53009 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAG 132722 | |||||| || || || || || || | |||| | ||| || | | Sbjct 53008 CTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 52949 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 || ||||| |||| ||| | |||||| ||| ||| ||||||| | || | || Sbjct 52948 AAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAG 52889 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 ||| | | | || || ||||| || || || || || || | | || || Sbjct 52888 CTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATAAT 52829 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902 ||| | || | | | | || || | || || |||||||||| | | ||||| Sbjct 52828 TTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAA 52769 Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 ||| || || || |||||||| ||| ||| ||||| ||| || || | ||||||||| Sbjct 52768 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCAT 52709 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 || || | ||| |||||||| ||||| | || ||| || |||||||||| || || Sbjct 52708 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 52649 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCG 133082 || || || || || || | |||| | | || | || |||||| |||||||||| Sbjct 52648 CACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATCCAGCG 52589 Query 133083 CAGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141 || ||||| || ||||| |||||| || || ||||| || || |||||||| || | Sbjct 52588 CAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCAATGGCGTTGAAGA--- 52533 Query 133142 GGAGTTTCTCTTCCGAGGAA---CGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 | | || | ||| |||| | | ||| ||||| |||||| ||||||||||| Sbjct 52532 GAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCG 52473 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 | |||| ||| |||||||||||||| ||||| || || | | || || | ||| | Sbjct 52472 AATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAA 52413 Query 133259 CTTCTTGAGCGAA-ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC-GAA 133316 ||||||| || || ||||| ||||| ||||| || || | |||||| || || || || Sbjct 52412 CTTCTTG-GCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAG 52354 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCG 133376 ||||| ||| || ||| |||||| | ||| | |||| | |||| || | Sbjct 52353 AAAGG-CAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTG 52295 Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 |||||||||| |||||||||||||| | ||||| || || ||||| || || || | Sbjct 52294 AATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACA 52235 Query 133437 CATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 ||| ||| || || ||| || ||||| | ||| | ||||||||||| Sbjct 52234 CATCTGCCAAATATCACGGTATCCGATAGGAAAGAAGACAGAGCGGCGGGGGTT 52181 >seq359707 Length=5412 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | || ||||| ||||||||| | || || ||| || Sbjct 2795 AAAATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGTCC 2736 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || ||||| || || ||| | || Sbjct 2735 AGTGACACCATCAAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGA 2677 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || |||||||||||||| || | | ||| | || || Sbjct 2676 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCCTTCTGATTA 2617 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || |||||| || || | || ||||| |||| || ||| |||| || ||| Sbjct 2616 CAGCATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 2565 >seq411564 Length=61085 Score = 105 bits (116), Expect = 7e-18 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||| || || || |||||||| ||||||||| | || || ||| ||| Sbjct 40671 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 40612 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC--GACC 38361 |||| | | | | | || | || |||| || || || || || ||| || |||| Sbjct 40611 GACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCCCGACC 40552 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||||| | || |||||||||||||| |||| ||||| | || |||| Sbjct 40551 AGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTATTTCTGATTACA 40492 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || || | || ||||| |||| || ||| | || || ||| Sbjct 40491 ACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGGC 40442 >seq418776 Length=96061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || | |||| ||||||||| | || || ||| ||| Sbjct 54879 ATGCAGATCTTCGTGAAGACCCTGANNNGCAAGACCATCACCCTGGAGGTGGAGTCCAGT 54938 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || || || || ||| | ||| | Sbjct 54939 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACTAG 54998 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || |||||||||||||| || | |||| || || |||||| Sbjct 54999 CAGAGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAAC 55058 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || |||| |||| || ||| |||| || ||| Sbjct 55059 ATCCAGAAAGAGTCAACATTGCACCTGGTCCTCCGTCTGAGGGGTGGC 55106 >seq331670 Length=23129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||| | || || || || |||| ||||||||| | || || ||| ||| Sbjct 22182 ATGCAGATCTTCATGAAGACCCTGACCTGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 22123 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| || | | || | | || |||| || ||||| || || ||||| ||||| Sbjct 22122 GACACCGAGAATGTCCTGGATGCCAAGATCCAGGATAAAGAAGGCATCCCCGCTGACCAG 22063 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||| | | || ||||||||| |||| || | ||||| || || |||||| Sbjct 22062 CAGAGGCTCCTCTTTGCAGGCAAACAGATGGAAGATGGCCGCACTCTTTCTGATTACAAC 22003 Query 38424 ATCCAAAAGGAAGCGAC 38440 ||||| || || |||| Sbjct 22002 ATCCAGAAAGAGTCGAC 21986 >seq233743 Length=26381 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 || ||||| || || ||| | || || ||| ||||||| | || |||||||||||||| Sbjct 21111 GATAAAGAAGGCATCCCCCCTGATCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAA 21170 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || || |||| |||||| || || |||| ||||| |||| || Sbjct 21171 GACGGCCGCACTCTTTCTGATTACAGCATCCAGAAAGAGTCGACCCTGCACCTGGTCCTC 21230 Query 38457 CGTTTGAGAGGCGGC 38471 ||| |||| || ||| Sbjct 21231 CGTCTGAGGGGTGGC 21245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497537864680960