Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq319347 248 7e-60 seq415575 104 2e-16 seq394555 104 2e-16 seq361425 102 6e-16 >seq319347 Length=14646 Score = 248 bits (274), Expect = 7e-60 Identities = 955/1488 (64%), Gaps = 39/1488 (3%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| || |||| ||||| || || ||||||||||| | |||||| ||||||||||| Sbjct 9495 TTATCTGCAGCAGAGACATTGAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATA 9436 Query 517310 TGAGGGACCCCTCTC-TGAG--------CAGGTGGGATCCCTTCCAAATTAAATGTTCCC 517360 ||||| || || | || | |||| || || ||| | | ||| | || Sbjct 9435 TGAGGAACACCACGGGTGGGGGGGCCGGCAGGAGGTATGCCTGTGAGTTCAAACTTGCCA 9376 Query 517361 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTA 517418 || || ||||| || || | | ||||| || ||| || || |||| ||| Sbjct 9375 AGCAGGTTGTTATCCTTGGTCATGGCATGCTCACCTTCATAAACCTGAATGAGTACACTG 9316 Query 517419 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTG 517477 | || || || || || |||||||| |||| || | || ||||| || ||| Sbjct 9315 --GGCTGGTTGTCCGAGTAGGTTGTAAAGG-TCTGCATCTGCTTGGTGGGAATGGTGGTG 9259 Query 517478 TTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGA 517537 || | | || | ||||| | ||||| || ||||| | ||||| ||||||||| Sbjct 9258 TTGCACTTGATGAGGACAGTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGA 9199 Query 517538 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 517597 |||||||| | || | | | ||||| |||||| | | ||| ||||| ||| Sbjct 9198 GTGACATCCAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAGAATGGCT 9139 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 || || | ||| |||||||| |||||||| || ||||| || | | | ||| |||| | Sbjct 9138 GCCTGGACAGCTGCACCATAAGCAACAGCCTCGTCAGGGTTGATGCTCTTATTCAGTTCT 9079 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCC 517716 || || ||||| | | ||||||| ||| | ||| || || || | ||| || || Sbjct 9078 TTCCCGTTGAAGGAGTCCTGTAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAACCACC 9020 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAA--CTTTT 517774 || | | ||| ||||| | ||| || || || || || | |||| ||| |||| Sbjct 9019 CACCAGGAGAATATCATGTATCTGAGACTTGTCTAGCTTGGCATCCCCCAAAGGGCTTTC 8960 Query 517775 TCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 517834 || || || || || | | |||| ||| | | |||||||| ||| || | Sbjct 8959 TCCACAGGGTCCAGTGTGCCACGGAACAGGTCAGCATTCAGTTCTTCAAATCAGGCACGG 8900 Query 517835 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 517894 |||| | | || | || |||||||| | | |||||| ||||| | | || Sbjct 8899 GTAATTGAGGTATAGAAGTCGATTCCTTCATAGAGGAAATCAATCTCAATACTGGCCTGG 8840 Query 517895 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC- 517953 | ||||| || | || |||||||| ||||| || || | || || | || Sbjct 8839 ATGCTGGAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGAAGGTGACGGACAGCC 8780 Query 517954 ---TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCA 518010 |||| || | |||| || | || | || |||||| ||| ||| | | | Sbjct 8779 CTCTTTTTCTCACTGATG----TCCTTCTTGTGCTTGTGCTTGAATTCTGCAATAAA--A 8726 Query 518011 TGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAAT--------TTAGTATTTCCTG 518060 || | || | | || ||||| ||||| || || || | |||| ||| | Sbjct 8725 TGGTTGACCATCTGGTTGTCAAAGTCTTCTCCACCTAAGCAGAGAAGTGGGTATCTCCAG 8666 Query 518061 ACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTC 518120 |||| ||| || | || | |||| | |||| || | | | |||||| || | Sbjct 8665 CTGTAGATCTGACCTCAAAGATTCCACCCTCAATAGTGAGGACTGACACATCAAAAGTGC 8606 Query 518121 CACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCAT 518180 ||||||| | |||||| || || ||||| ||||| | ||||| || | |||| Sbjct 8605 CACCACCTAAATCAAAGATCAGCACATTTCTTTCTGCTCCAACCTTTTTGTCTAAGCCAT 8546 Query 518181 ACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTC 518240 | |||| |||||| ||||||||||| || || |||| | ||||| || |||||||| Sbjct 8545 AGGCAATAGCAGCTGCAGTTGGTTCGTTGATGATTCGAAGTACATTGAGCCCAGCAATAG 8486 Query 518241 TTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 518300 |||| |||||||| || || || | || ||||| ||||| || | || || || | || Sbjct 8485 TTCCAGCATCTTTGGTAGCCTGACGCTGAGAATCATTAAAGTAAGTGGGTACTGTGACAA 8426 Query 518301 CGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAA 518360 | |||| || || || |||| || || ||| ||| |||| || | |||| Sbjct 8425 CAGCATGGGTAACAGTCTTCCCAAGGTAGGCTTCTGCTATTTCCTTCACCTTTGTCAAAA 8366 Query 518361 TCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAA 518420 |||| ||||| | | ||||| || | || | || | ||| ||||| || Sbjct 8365 TCATGGATGACACCTCCTCTGGATAAAAACTTTTTGTCTCTCCCTTGTATTCTACTTGAA 8306 Query 518421 AATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAA 518480 | || | || |||| | | | || ||||| | |||||||| || || | Sbjct 8305 CCTTAGGCCTGCCTGCATCATTCACCATCATGAAAGGCCAATGCTTCATATCAGACTGGA 8246 Query 518481 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 518540 | |||| ||| || ||||| | ||||| |||||||||| | ||||| | Sbjct 8245 AAACAGCATCATCAAATCTTCGTCCAATGAGGCGTTTGGCATCAAAAACCATGTTGGTGG 8186 Query 518541 GATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 518600 |||| |||||| |||| | || || ||||| ||| ||| |||| || || ||||| | Sbjct 8185 GATTCATTGCAACTTGGTTCTTTGCAGCATCACCAGTCAATCGTTCGGTATCAGTAAAGG 8126 Query 518601 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 518660 ||||| ||| || || | || || |||||| | ||||| ||||| || || || | Sbjct 8125 TGACATAGCTTGGGGTAGTTTGGTTCCCCTGATCACTGGCAATTATTTCCACCTTTCCGT 8066 Query 518661 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 518708 || | ||||| |||||| | | || || || | | |||| |||| Sbjct 8065 GCTGGAAGACACCCACACAAGAATAGGTGGTGCCAAGACCAATGCCAA 8018 >seq415575 Length=19035 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| ||||| || | || Sbjct 1606 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATAATCCTAAGTACG 1547 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||| |||||||| || || || | || ||||| ||||| || Sbjct 1546 TTGAGCCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAATCATTAAAGTAA 1487 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | ||| |||| Sbjct 1486 GCGGGTACTGTGACAACAGCAT 1465 >seq394555 Length=21707 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 20570 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 20629 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | || || |||||||| |||||||||||||| | |||||| | Sbjct 20630 GTGGTTGGGAGAGACAAGTACGGGGTTTTCCCTCTTAGAGGAAAACTGCTTAATGTTCGA 20689 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 20690 GAAGCTTCTCATAAA 20704 >seq361425 Length=9997 Score = 102 bits (112), Expect = 6e-16 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 518495 AAATCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGC 518553 |||||| | ||||| | ||||| |||||||||| || ||||| ||||| |||||| | Sbjct 4 AAATCTTCGTCCAATGAGGCGTTTGGCATCAAAAACCGTGTTGGTAGGATTCATTGCAAC 63 Query 518554 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 518613 ||| | ||| | ||||| || |||| ||| || || ||||| | ||||| || Sbjct 64 TTGGTTCTTG-CAGCATCACCGATCAATCGTTTGGTATCAGTAAAGGCGACATAGCTAGG 122 Query 518614 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 518673 || || | || ||||||||||| ||| | ||||| || || || | || | ||||| Sbjct 123 TGTAGTTTGGTTCCCTTGATCATTGGCAGTTATTTCCACCTTTCCGTGCTGGAAGACACC 182 Query 518674 TACACAACTAAAAGTTGTTCCTAAATCAATACCAA 518708 |||||| | | || || || | |||||| |||| Sbjct 183 CACACAAGAATAGGTGGTGCCAAGATCAATGCCAA 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3759908960483464