Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq359707 127 5e-24 seq364176 123 6e-23 seq397823 105 1e-17 seq414080 102 2e-16 seq233743 98.7 2e-15 seq366847 87.8 4e-12 >seq359707 Length=5412 Score = 127 bits (140), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||||| | | |||| |||||||| Sbjct 2584 ACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCATCTTCC 2643 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || ||||| || || ||||||||||| || || Sbjct 2644 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 2703 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||| ||||||| ||||||| | | || ||||| || ||||| | |||| Sbjct 2704 ATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGAC--TCCACCTCCAGGGTGATGGTCT 2761 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || ||||| || || ||||| | ||||||| Sbjct 2762 TGCCAGTCAAGGTCTTCACGAAGATCTGCATTT 2794 >seq364176 Length=18321 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||| | |||| || | | ||| | Sbjct 5348 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGT 5407 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 5408 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 5467 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || || || || || | || ||| | ||| || || || || Sbjct 5468 TTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTG 5527 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || ||||| | ||||| Sbjct 5528 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 5565 >seq397823 Length=5921 Score = 105 bits (116), Expect = 1e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| | ||| |||||||||||||| |||||| | ||||| || | | ||| | Sbjct 1676 AGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGTACGT 1735 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || | || ||| |||| | |||||| |||| Sbjct 1736 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCCTTGCTGGTTAGAAGGAATTACTTCC 1795 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || || || || || | || ||||| ||| || || || || Sbjct 1796 TTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTG 1855 Query 195103 ACCGTCTTTCCTGTCA 195118 | ||||| ||||||| Sbjct 1856 ATGGTCTTCCCTGTCA 1871 >seq414080 Length=5684 Score = 102 bits (112), Expect = 2e-16 Identities = 133/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACA-AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||| | || |||||||||||||| |||||||| ||||| || | ||| | Sbjct 4738 AGTCTCAACATTTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 4683 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 4682 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 4623 Query 195042 TTTGTCTTGAATTTTTTGCTTGAC-GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100 || || || || || ||| || || || | || || || ||| |||||||| | Sbjct 4622 CTTATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAG 4563 Query 195101 T 195101 | Sbjct 4562 T 4562 >seq233743 Length=26381 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||||| | |||||| | || ||||| Sbjct 21226 ACCAGGTGCAGGGTCGACTCTTTCTGGATGCTGTAATCAGAAAGAGTGCGGCCGTCTTCC 21167 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || || || || || ||||||||||| || | | Sbjct 21166 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGGGGGATGCCTTCTTTATCCTCA 21107 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| | ||||| |||||||| Sbjct 21106 ATCTTGGCCTTCATGTTCTTGATGGTGTC 21078 >seq366847 Length=8421 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || || |||| || | |||||||| |||||||| ||| Sbjct 1827 GTGTAGGGTGGACTCTTTCTGGATGTTGTTGTCTG--AGAGTTCTACCATCTTCCCACTG 1770 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || | || ||||| || | || || || |||||||| ||||| Sbjct 1769 TTTGCCCATAAAAATCAGATGCTGCTGGTCAGGCAGGATACCCTCCTTGTCTTGGATTTT 1710 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||| |||| ||| | ||||| |||||||| ||||| ||||| Sbjct 1709 GGCCTTGACATTCTTTATGGAGTCACTGGTCTCCACCTCAAGGGTGGTGGTCTTGCCTGT 1650 Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTG 195156 || || || || | | ||||| | || | |||| || Sbjct 1649 CAGGGTCTTCACACAGATCTGCATCTCTGCGTCCTTGTTG 1610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1103490675343548