Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq366847 84.2 1e-11 seq258579 84.2 1e-11 >seq366847 Length=8421 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||| | ||| || || ||| |||| ||| Sbjct 1832 ACCAAGTGTAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAG--TTCTACCATCTTCC 1775 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||| || ||| || || | |||||||| || | | ||||||||||| Sbjct 1774 CACTGTTTGCCCATAAAAATCAGATGCTGCTGGTCAGGCAGGATACCCTCCTTGTCTTGG 1715 Query 34893 ATCTTCTGTTTGACGGATGC--TATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || | ||| || |||| || ||| || || | ||| |||| | Sbjct 1714 ATTTTGGCCTTGAC--ATTCTTTATGGAGTCACTGGTCTCCACCTCAAGGGTGGTGGTCT 1657 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||| |||||||||| Sbjct 1656 TGCCTGTCAGGGTCTTCACACAGATCTGCAT 1626 >seq258579 Length=20613 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||| ||| ||||| || | | ||| |||| ||||| || || || ||||| Sbjct 19159 TCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATCTTCCAGTTGCTTGCCTGCAAAG 19100 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | || |||||||| ||||| || || | Sbjct 19099 ATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 19040 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || || || || | || ||||| || ||||| || |||||||| Sbjct 19039 TCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACG 18980 Query 34971 AAGATCTGCATATT 34984 || ||||||||||| Sbjct 18979 AAAATCTGCATATT 18966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322966168614432