Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 450 2e-121
seq404197 369 4e-97
seq418289 123 3e-23
seq400361 120 3e-22
seq327453 107 2e-18
seq346476 82.4 9e-11
>seq366024
Length=42324
Score = 450 bits (498), Expect = 2e-121
Identities = 685/968 (71%), Gaps = 8/968 (1%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||| ||||||||| | ||| | ||| |||| |||
Sbjct 18402 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTG--TCAGACTGGACATCACTCTCATC 18345
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || ||| |||| ||||| || || || | ||| |||
Sbjct 18344 CTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 18285
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| ||||||||||||| ||| | | | || | || || | || |
Sbjct 18284 TCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATA 18225
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || |||| || || ||||||| | |||||||| || || |
Sbjct 18224 AGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 18165
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908
|| || || || ||||| || || || || |||||||| | ||||| | ||| || ||
Sbjct 18164 TTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT-TGACGATTAT 18106
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
|| ||||| | || ||| || ||| || ||||| || |||| || |||||
Sbjct 18105 TTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAA 18046
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
||||| |||| ||||||||||| || || | |||||| |||||||| | || || ||
Sbjct 18045 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTAT 17986
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
||| |||| |||||| | ||||||||| || ||||| || ||||||||||| || |||||
Sbjct 17985 CAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 17926
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
||||| ||||| || || | | ||||||||| |||| || || | |||||
Sbjct 17925 CACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCA 17866
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| |||||||| |||||||| |||||||| ||||||||||| |||| || || ||| |
Sbjct 17865 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAA 17806
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
| || | | |||||||| || | || || | | ||| |||||||| |||||
Sbjct 17805 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 17746
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
|| ||||| || || || | || || || ||||| | ||||| || ||||| |||||
Sbjct 17745 GATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 17686
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
| ||| || ||||| |||||||| ||||| |||||||| |||||||| || ||
Sbjct 17685 TTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 17626
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATAT 19447
| | ||| ||| |||| | | || || | | || | | || ||| | | ||| |
Sbjct 17625 CAGAATATGCGAAATGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGT 17567
Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507
| || || | || || |||||| |||||||||| |||||||| ||||| |||||||| |
Sbjct 17566 CCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 17507
Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567
||| |||||| | |||| |||||||| || ||||| | | |||||||| ||||
Sbjct 17506 GCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGCGGCGGGTGTTTTCTTTCAGAA 17447
Query 19568 TAGGTTCC 19575
||||||
Sbjct 17446 GTGGTTCC 17439
>seq404197
Length=65104
Score = 369 bits (408), Expect = 4e-97
Identities = 644/929 (69%), Gaps = 10/929 (1%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668
||| || ||| ||||||| | ||| ||||||||| || | | || ||| ||||||||
Sbjct 53125 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 53069
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||
Sbjct 53068 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATT 53009
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||||| ||||||||||||| ||| | | | || | || || | || | |
Sbjct 53008 CTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 52949
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
||||| || || | ||||| || || ||||||| | | |||||||| || || |
Sbjct 52948 AAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAG 52889
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907
|| || | | || || || || || || |||||||| | ||||| | ||| ||||
Sbjct 52888 CTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT-TGACGATAA 52830
Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
| | ||||| | || ||| || ||| || ||||| ||||||| | ||||
Sbjct 52829 TTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAA 52770
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
| ||||| |||| ||||||||||| || || | |||||| |||||||| | || ||||
Sbjct 52769 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCA 52710
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
||||||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||
Sbjct 52709 TCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTT 52650
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147
| ||||| ||||| || || | | | || || ||||| || || | | |||||
Sbjct 52649 CCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATCCAGC 52590
Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207
|| |||||||| |||||||| |||||||| ||||||||||| || | || || |||
Sbjct 52589 GCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAA 52530
Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267
| | || | | ||||| || || | || || | | ||| |||||||| ||||
Sbjct 52529 ATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAAT 52470
Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327
| || ||||| || || || || || || || ||| | ||||| || ||||| ||||
Sbjct 52469 GTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTT 52410
Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387
| | || | || |||| |||||||| |||| || ||||| |||||| | || |
Sbjct 52409 CTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAG 52350
Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446
| ||||| | | |||| | | || || | | || | | || || | | |||
Sbjct 52349 GCAGGACATGCGAAGTGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCGGTGCTGAATG 52291
Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506
|| || || | || || || ||| | ||||| || |||||||| || || ||| ||||
Sbjct 52290 TCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATC 52231
Query 19507 TTCCATATATCACGATATTGTATAGGAAA 19535
| ||| |||||||| ||| ||||||||
Sbjct 52230 TGCCAAATATCACGGTATCCGATAGGAAA 52202
>seq418289
Length=29330
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || | |||||| |||||||| | || |||||||| |||| |||||
Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 26672 CTACGACACGTTCTCC 26657
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/147 (76%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668
||| || ||| ||||||| | ||| ||||||||| || | | || ||| ||||||||
Sbjct 28516 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 28460
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 28459 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 28400
Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755
||||| || ||||||||||||| |||
Sbjct 28399 CTCCATGAAGTCAAATGGATTTTCTAC 28373
>seq400361
Length=55729
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| ||||||||||| |||
Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 38541
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 38542 ACCACCCTTTCCCC 38555
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||||
Sbjct 24214 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 24273
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 24274 ATAAAATCAAAGGGATTTT 24292
>seq327453
Length=26950
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || ||||| ||||| ||||| || ||
Sbjct 17788 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 17847
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| || || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 17848 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 17907
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 17908 TTTCTTATACCATA 17921
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/171 (72%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || |
Sbjct 15556 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 15615
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || || ||||| ||||||||| |||| | ||
Sbjct 15616 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 15673
Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
|| || | || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 15674 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 15724
>seq346476
Length=8320
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| ||||| ||||||| ||||| || | | ||
Sbjct 4620 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 4679
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | |||||| | ||| |||
Sbjct 4680 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 4739
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| || |||||||||
Sbjct 4740 ATATGCTGTGGTCTTTCA 4757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559147582736160
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