Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq366024 450 2e-121 seq404197 369 4e-97 seq418289 123 3e-23 seq400361 120 3e-22 seq327453 107 2e-18 seq346476 82.4 9e-11 >seq366024 Length=42324 Score = 450 bits (498), Expect = 2e-121 Identities = 685/968 (71%), Gaps = 8/968 (1%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||| ||||||||| | ||| | ||| |||| ||| Sbjct 18402 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTG--TCAGACTGGACATCACTCTCATC 18345 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || ||| |||| ||||| || || || | ||| ||| Sbjct 18344 CTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 18285 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||||||||||| ||| | | | || | || || | || | Sbjct 18284 TCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATA 18225 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || |||| || || ||||||| | |||||||| || || | Sbjct 18224 AGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 18165 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908 || || || || ||||| || || || || |||||||| | ||||| | ||| || || Sbjct 18164 TTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT-TGACGATTAT 18106 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 || ||||| | || ||| || ||| || ||||| || |||| || ||||| Sbjct 18105 TTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAA 18046 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| |||| ||||||||||| || || | |||||| |||||||| | || || || Sbjct 18045 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTAT 17986 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 ||| |||| |||||| | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 17985 CAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 17926 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 ||||| ||||| || || | | ||||||||| |||| || || | ||||| Sbjct 17925 CACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCA 17866 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| |||||||| ||||||||||| |||| || || ||| | Sbjct 17865 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAA 17806 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || | | |||||||| || | || || | | ||| |||||||| ||||| Sbjct 17805 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 17746 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || | || || || ||||| | ||||| || ||||| ||||| Sbjct 17745 GATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 17686 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | ||| || ||||| |||||||| ||||| |||||||| |||||||| || || Sbjct 17685 TTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 17626 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATAT 19447 | | ||| ||| |||| | | || || | | || | | || ||| | | ||| | Sbjct 17625 CAGAATATGCGAAATGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGT 17567 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | || || | || || |||||| |||||||||| |||||||| ||||| |||||||| | Sbjct 17566 CCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 17507 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 ||| |||||| | |||| |||||||| || ||||| | | |||||||| |||| Sbjct 17506 GCCAAATATCATGGTATTTGATAGGAAAGATGACAAAGCGGCGGGTGTTTTCTTTCAGAA 17447 Query 19568 TAGGTTCC 19575 |||||| Sbjct 17446 GTGGTTCC 17439 >seq404197 Length=65104 Score = 369 bits (408), Expect = 4e-97 Identities = 644/929 (69%), Gaps = 10/929 (1%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 53125 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 53069 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| || Sbjct 53068 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATT 53009 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||||||||||| ||| | | | || | || || | || | | Sbjct 53008 CTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 52949 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || | ||||| || || ||||||| | | |||||||| || || | Sbjct 52948 AAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAG 52889 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 || || | | || || || || || || |||||||| | ||||| | ||| |||| Sbjct 52888 CTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT-TGACGATAA 52830 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || ||| || ||| || ||||| ||||||| | |||| Sbjct 52829 TTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAA 52770 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | |||||| |||||||| | || |||| Sbjct 52769 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCA 52710 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||| Sbjct 52709 TCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTT 52650 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| ||||| || || | | | || || ||||| || || | | ||||| Sbjct 52649 CCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATCCAGC 52590 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || |||||||| |||||||| |||||||| ||||||||||| || | || || ||| Sbjct 52589 GCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAA 52530 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || | | ||||| || || | || || | | ||| |||||||| |||| Sbjct 52529 ATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAAT 52470 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || || || ||| | ||||| || ||||| |||| Sbjct 52469 GTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTT 52410 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || | || |||| |||||||| |||| || ||||| |||||| | || | Sbjct 52409 CTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAG 52350 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446 | ||||| | | |||| | | || || | | || | | || || | | ||| Sbjct 52349 GCAGGACATGCGAAGTGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCGGTGCTGAATG 52291 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || || | || || || ||| | ||||| || |||||||| || || ||| |||| Sbjct 52290 TCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATC 52231 Query 19507 TTCCATATATCACGATATTGTATAGGAAA 19535 | ||| |||||||| ||| |||||||| Sbjct 52230 TGCCAAATATCACGGTATCCGATAGGAAA 52202 >seq418289 Length=29330 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || |||||||| |||| ||||| Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 26672 CTACGACACGTTCTCC 26657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 28516 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 28460 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 28459 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 28400 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||||||||||| ||| Sbjct 28399 CTCCATGAAGTCAAATGGATTTTCTAC 28373 >seq400361 Length=55729 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 38541 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 38542 ACCACCCTTTCCCC 38555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 24214 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 24273 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 24274 ATAAAATCAAAGGGATTTT 24292 >seq327453 Length=26950 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 17788 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 17847 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 17848 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 17907 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 17908 TTTCTTATACCATA 17921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 15556 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 15615 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||| |||| | || Sbjct 15616 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 15673 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 15674 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 15724 >seq346476 Length=8320 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 4620 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 4679 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 4680 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 4739 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 4740 ATATGCTGTGGTCTTTCA 4757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559147582736160