Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq358275 127 3e-24 seq384054 98.7 1e-15 seq294471 98.7 1e-15 >seq358275 Length=9272 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | ||||| || |||| | ||| ||| ||| ||||| Sbjct 8173 ACTGAGGAACTTACAAGTTGTCCCTCACACCAAATGGTCTAAAAATAGGACCTGTGAGAT 8114 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| |||| | ||| ||||||| |||| ||| ||| || Sbjct 8113 CCACCTGACCTGCTCTGTGGAGAATCCAAGTGATAACATCTTATTCAGGTGGCAGGTCTC 8054 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| | | || | |||||||| | |||||||||||||| || | Sbjct 8053 AGGAAACACACTTCAAAGTGAAGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCGA 7994 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||| | || || || |||| |||||| || ||| | ||||| Sbjct 7993 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 7934 Query 2447 GGCCCAGA 2454 | ||||| Sbjct 7933 TGTCCAGA 7926 >seq384054 Length=22204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| |||| ||||| ||||| | |||||||| |||||| Sbjct 2076 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCGTGGGGGAGTCTGTAACA 2017 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || ||||| | | ||| || |||||||||| |||||||||||||| | | || Sbjct 2016 CTTACCCTGAAGTCTCCTATGGAAGAGAAGATCATGTCCATCACCTGGCTTCATGATGGA 1957 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGC-CAAGAGCCCCCAGATCCACCTAACCAA 2056 | || ||| ||| || | || || || | | | ||| || | |||| Sbjct 1956 AAATCTATCATCTTCATAGAGCCAAATGAAGCACTAAA-----CAGGGTGACTGACCCAA 1902 Query 2057 TCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || || || ||| | || |||| ||||||||||| | || || |||||||| Sbjct 1901 AGCGGAA-----AAATCGATTGAAGGTCACCAAGTCCTACTCCTTGCAGCTCAGCAACCT 1847 Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC-G 2175 ||||| |||||| || | ||||| |||| ||| || | |||| | || || | Sbjct 1846 GACGATGGCAGACACAGGACCTTACAGCGCCCAGATAACCACACTGACCTC--TTCACTG 1789 Query 2176 TT-TCCAGCTACACGCTGAGGATCTTC 2201 || |||| || |||||||||||| Sbjct 1788 TTCACCAGTTATGATCTGAGGATCTTC 1762 >seq294471 Length=21074 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||| ||||| || |||||||| |||| Sbjct 2497 GTTTCACAAATCAGCTCAACCCCATTGATTGTGAACGGGGTCCTGGGGGAGTCTATAACT 2556 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || |||||||||| |||||||||||||| Sbjct 2557 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACGTCCATCACCTGGC 2605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625968104638240