Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq358275 127 3e-24
seq384054 98.7 1e-15
seq294471 98.7 1e-15
>seq358275
Length=9272
Score = 127 bits (140), Expect = 3e-24
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266
||||| |||| | || || | ||||| || |||| | ||| ||| ||| |||||
Sbjct 8173 ACTGAGGAACTTACAAGTTGTCCCTCACACCAAATGGTCTAAAAATAGGACCTGTGAGAT 8114
Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326
||| |||||||| ||||| ||| |||| | ||| ||||||| |||| ||| ||| ||
Sbjct 8113 CCACCTGACCTGCTCTGTGGAGAATCCAAGTGATAACATCTTATTCAGGTGGCAGGTCTC 8054
Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386
|| || || |||| | | || | |||||||| | |||||||||||||| || |
Sbjct 8053 AGGAAACACACTTCAAAGTGAAGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCGA 7994
Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446
||| ||| |||||| ||| | || || || |||| |||||| || ||| | |||||
Sbjct 7993 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 7934
Query 2447 GGCCCAGA 2454
| |||||
Sbjct 7933 TGTCCAGA 7926
>seq384054
Length=22204
Score = 98.7 bits (108), Expect = 1e-15
Identities = 221/327 (68%), Gaps = 15/327 (5%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || ||||||||||| ||||| |||| ||||| ||||| | |||||||| ||||||
Sbjct 2076 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCGTGGGGGAGTCTGTAACA 2017
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| ||||| | | ||| || |||||||||| |||||||||||||| | | ||
Sbjct 2016 CTTACCCTGAAGTCTCCTATGGAAGAGAAGATCATGTCCATCACCTGGCTTCATGATGGA 1957
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGC-CAAGAGCCCCCAGATCCACCTAACCAA 2056
| || ||| ||| || | || || || | | | ||| || | ||||
Sbjct 1956 AAATCTATCATCTTCATAGAGCCAAATGAAGCACTAAA-----CAGGGTGACTGACCCAA 1902
Query 2057 TCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116
|| || || ||| | || |||| ||||||||||| | || || ||||||||
Sbjct 1901 AGCGGAA-----AAATCGATTGAAGGTCACCAAGTCCTACTCCTTGCAGCTCAGCAACCT 1847
Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC-G 2175
||||| |||||| || | ||||| |||| ||| || | |||| | || || |
Sbjct 1846 GACGATGGCAGACACAGGACCTTACAGCGCCCAGATAACCACACTGACCTC--TTCACTG 1789
Query 2176 TT-TCCAGCTACACGCTGAGGATCTTC 2201
|| |||| || ||||||||||||
Sbjct 1788 TTCACCAGTTATGATCTGAGGATCTTC 1762
>seq294471
Length=21074
Score = 98.7 bits (108), Expect = 1e-15
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| |||| ||||| ||||| || |||||||| ||||
Sbjct 2497 GTTTCACAAATCAGCTCAACCCCATTGATTGTGAACGGGGTCCTGGGGGAGTCTATAACT 2556
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986
|| ||||| | ||||| | || |||||||||| ||||||||||||||
Sbjct 2557 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACGTCCATCACCTGGC 2605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 625968104638240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |