Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq366024 266 4e-66 seq404197 194 2e-44 seq418289 111 2e-19 seq400361 107 2e-18 >seq366024 Length=42324 Score = 266 bits (294), Expect = 4e-66 Identities = 609/899 (68%), Gaps = 22/899 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||| ||| | ||||| || || |||| |||| || | || || ||||| |||| Sbjct 18357 CATCACTCTCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTCCCTT 18299 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 18298 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAA 18241 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046 | ||| || ||| || || || || ||||| ||||| | ||| | || || Sbjct 18240 ACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCA 18181 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 || || ||||| || || ||||| | ||||| ||| ||| | | || ||||| | Sbjct 18180 A--TTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTT-CTATTCT 18124 Query 37106 TACAGCATCTTTAACTAT-ATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTAAAT 37161 || |||| | || || ||| | | ||| ||| || | || | | | | Sbjct 18123 AACTGCAT---TGACGATTATTTATT-TGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGT 18068 Query 37162 ATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCAT 37221 ||| || | | || ||||| ||||| |||||||| || ||||| || || | ||||| Sbjct 18067 GTTTGAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCAT 18008 Query 37222 TAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG 37281 | ||||| || | || || || | ||||| |||||| | ||| ||||| | |||||||| Sbjct 18007 TGGAAAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAG 17948 Query 37282 ATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTG 37341 | ||||||||||| || ||||| ||||| ||||| ||||| | |||| || | || | Sbjct 17947 AACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAG 17888 Query 37342 AACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 | || ||||| | |||||||||||| || ||||| |||| Sbjct 17887 CCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 17828 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | ||||| || || |||||||| | |||||| |||| | || ||||| ||||| | Sbjct 17827 TCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGA 17768 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | ||||||||||||||| || || ||||| || || || | || ||||| ||||| | Sbjct 17767 GGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAAC 17708 Query 37522 TAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 ||||| | |||| ||||| || | |||| || | ||||||||||| ||||| Sbjct 17707 GGGCTTCCG-TAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATG 17649 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT 37640 |||||||| |||||||||||||| |||| || || |||| ||| || ||| Sbjct 17648 CCATCACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTC 17589 Query 37641 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTT 37700 | || ||| | | ||| || || || | || || || ||| | |||||||| Sbjct 17588 AGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAA 17529 Query 37701 GCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||| || ||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 17528 GCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 194 bits (214), Expect = 2e-44 Identities = 305/434 (70%), Gaps = 2/434 (0%) Strand=Plus/Minus Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||| ||||| |||||||| || ||||| || || | |||||| ||||| || | || Sbjct 52773 GCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCG 52714 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298 ||||| | |||| ||| || | ||| ||||| | ||||||||| ||||||||||| || Sbjct 52713 GGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATT 52654 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358 ||||| ||||| ||||| ||||| | ||| | | | | | | | || ||| Sbjct 52653 CCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATC 52594 Query 37359 CAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAG 37418 || | |||||||||||| || ||||| ||||| ||||| || || ||| Sbjct 52593 CAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAG 52534 Query 37419 AGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCA 37478 ||||| | |||||| |||| || ||||| ||||| || | |||||||||||| Sbjct 52533 AGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCC 52474 Query 37479 GAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TG 37537 || || || ||||| || || || || || ||||| ||| | ||||| | |||| || Sbjct 52473 GAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCG-TAATCTG 52415 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 ||| || | || || || | | ||||||||| |||| || ||||| |||||| | Sbjct 52414 AACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGA 52355 Query 37598 GAAAGCAAGAACAT 37611 ||||| || |||| Sbjct 52354 GAAAGGCAGGACAT 52341 >seq418289 Length=29330 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | |||||| ||||| || | || ||||| | ||||| |||||| Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 26670 ACGACACGT 26662 >seq400361 Length=55729 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||||| | Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539 Query 37318 CTAC 37321 | || Sbjct 38540 CCAC 38543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589196445481760