Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 334 6e-87
seq273439 176 4e-39
seq397969 145 6e-30
seq408533 102 7e-17
seq317162 95.1 1e-14
seq344518 89.7 4e-13
seq383823 82.4 6e-11
>seq397970
Length=5258
Score = 334 bits (370), Expect = 6e-87
Identities = 520/743 (70%), Gaps = 5/743 (1%)
Strand=Plus/Minus
Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769
|| || || ||||| ||||| || | ||||| || | | || || || ||||
Sbjct 2337 AAGTCTTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGG 2278
Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829
|| || || || || | || |||||| | |||||| | || | ||||| |||||| | |
Sbjct 2277 AAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGTAAATG 2218
Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889
|| || ||||||| ||||| ||||| || || || | || || |||| ||| || |||
Sbjct 2217 TGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCGATC 2158
Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949
||||| | || | ||||||||||||||| ||||| || || || ||||| || ||
Sbjct 2157 ATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATATCTCCT 2103
Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009
||||||||||| ||||| || || ||||| |||| |||||| ||||| || | || |
Sbjct 2102 GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCG 2043
Query 30010 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30069
|||||||| || || |||||||| | ||||| || ||||| || |||| ||||||
Sbjct 2042 TGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATT 1983
Query 30070 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 30129
| ||||| || |||||| | |||| ||| | |||||||| ||||| || ||
Sbjct 1982 CTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCT 1923
Query 30130 ATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAAC 30189
| || || |||| ||| || |||| || || || |||||||||||||| ||
Sbjct 1922 TGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAG 1863
Query 30190 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 30249
|| || || || || | || || ||| | ||| ||| ||| ||||||| |||
Sbjct 1862 CCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAG 1803
Query 30250 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTT 30309
|||| ||| || ||||| |||||||| || || ||||| || ||||| || | ||||
Sbjct 1802 TCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTT 1743
Query 30310 GTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTG 30369
||||| || ||| |||||||||| ||||||| || |||| || || || | |||
Sbjct 1742 GTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTG 1683
Query 30370 GTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGAC 30429
|| || || || ||||| | | | |||| ||| ||||| || ||||| |||
Sbjct 1682 GTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGAC 1623
Query 30430 AAGACTCCCGTGCCCGTCCTGTC 30452
| | || |||||||| | |||
Sbjct 1622 AGGGTGCCGGTGCCCGTGCGGTC 1600
>seq273439
Length=4507
Score = 176 bits (194), Expect = 4e-39
Identities = 387/571 (68%), Gaps = 17/571 (3%)
Strand=Plus/Minus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
||||||||| || || || | || ||||| | |||||| | || | |||||||||||
Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
| | ||| || ||||||| ||||| ||| | || || || | || || |||| ||| |
Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| |||||||| ||||| || | |||||||||| ||| |||| || || || ||| |||
Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004
| || ||||||||||| ||||| || || ||||| || |||||| || || || |
Sbjct 2276 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 2218
Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063
| | |||| | | | || |||| ||| ||||| | ||||| || || |
Sbjct 2217 --GGGCGGCA--GGGTATGA-----GAGG---AAGATCTTT-TGATTCCAAGCACATAGA 2171
Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123
||||| | |||||||| || ||| | |||| ||| | | |||||||| || ||
Sbjct 2170 ATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCT 2111
Query 30124 ACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30182
|| || | || || | | || || |||| || || | ||| ||||||
Sbjct 2110 ACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCCA 2051
Query 30183 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30242
||| || | | || || || | || || ||||| ||| || || ||||
Sbjct 2050 CTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTC 1991
Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302
||| ||||||| ||| |||| ||| |||||||| || || ||||| || ||||| ||
Sbjct 1990 CAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTT 1931
Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGC 30333
| |||||||| || ||| |||||||||
Sbjct 1930 AGCATTTGTGGAGCCCTTGATCAACCACAGC 1900
>seq397969
Length=7843
Score = 145 bits (160), Expect = 6e-30
Identities = 131/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || ||||||||| | ||||| || || ||||| |||| |
Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033
||||| ||||| || | || ||||||||| || || |||||||||
Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || |||||||||||||| || || || || || || | ||
Sbjct 4453 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 4394
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| ||
Sbjct 4393 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 4334
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 4333 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 4286
>seq408533
Length=33819
Score = 102 bits (112), Expect = 7e-17
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 27117 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27176
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| || || |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 27177 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 27236
Query 112200 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231
||| || || |||| ||||||| || | |||||
Sbjct 27237 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 27268
>seq317162
Length=29175
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/228 (70%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 112111 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 112170
|| ||||| |||| || || ||||| | | ||||| |||||| || || |||||||||
Sbjct 9459 CTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAGAAC 9400
Query 112171 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTC 112230
|| || || |||||||| |||||| ||||| || ||| |||||||| || | ||||
Sbjct 9399 CATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC 9340
Query 112231 AAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCG 112290
| | | || | | | || || | || || |||| ||||| || |||
Sbjct 9339 ATTCTTTGGAAATACCTGTATTCATTCCTGAG------CGGGGGCCAGGGCAGGTCCCCG 9286
Query 112291 TTGTTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337
|| || || ||||||||| ||||| |||| || ||||| | ||| ||
Sbjct 9285 TTCTTGCCAATGCCCATGTTCTGG-GACACAGCAACGATGCAGTTTAG 9239
>seq344518
Length=1300
Score = 89.7 bits (98), Expect = 4e-13
Identities = 162/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 112082 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCA 112141
||||||| || || || || || || || |||| |||| || || ||||| || |
Sbjct 823 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 882
Query 112142 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 112197
||||| |||||| || || ||| |||||||| || || |||||||| |||||||
Sbjct 883 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 942
Query 112198 TTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTT 112256
||||| || || |||| ||||||| || | ||||| | | || | | | || ||
Sbjct 943 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT 1001
Query 112257 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT 112309
| | ||||| |||| ||||| || | ||| || |||||||||||||
Sbjct 1002 CCTGA-----GCAGG-GGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGT 1048
>seq383823
Length=18616
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 9583 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9524
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || || |||||||| ||||||| ||||| || |||
Sbjct 9523 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406518797501012
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