Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq397970 334 6e-87 seq273439 176 4e-39 seq397969 145 6e-30 seq408533 102 7e-17 seq317162 95.1 1e-14 seq344518 89.7 4e-13 seq383823 82.4 6e-11 >seq397970 Length=5258 Score = 334 bits (370), Expect = 6e-87 Identities = 520/743 (70%), Gaps = 5/743 (1%) Strand=Plus/Minus Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769 || || || ||||| ||||| || | ||||| || | | || || || |||| Sbjct 2337 AAGTCTTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGG 2278 Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829 || || || || || | || |||||| | |||||| | || | ||||| |||||| | | Sbjct 2277 AAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGTAAATG 2218 Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889 || || ||||||| ||||| ||||| || || || | || || |||| ||| || ||| Sbjct 2217 TGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCGATC 2158 Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949 ||||| | || | ||||||||||||||| ||||| || || || ||||| || || Sbjct 2157 ATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATATCTCCT 2103 Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009 ||||||||||| ||||| || || ||||| |||| |||||| ||||| || | || | Sbjct 2102 GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCG 2043 Query 30010 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30069 |||||||| || || |||||||| | ||||| || ||||| || |||| |||||| Sbjct 2042 TGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATT 1983 Query 30070 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 30129 | ||||| || |||||| | |||| ||| | |||||||| ||||| || || Sbjct 1982 CTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCT 1923 Query 30130 ATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAAC 30189 | || || |||| ||| || |||| || || || |||||||||||||| || Sbjct 1922 TGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAG 1863 Query 30190 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 30249 || || || || || | || || ||| | ||| ||| ||| ||||||| ||| Sbjct 1862 CCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAG 1803 Query 30250 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTT 30309 |||| ||| || ||||| |||||||| || || ||||| || ||||| || | |||| Sbjct 1802 TCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTT 1743 Query 30310 GTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTG 30369 ||||| || ||| |||||||||| ||||||| || |||| || || || | ||| Sbjct 1742 GTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTG 1683 Query 30370 GTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGAC 30429 || || || || ||||| | | | |||| ||| ||||| || ||||| ||| Sbjct 1682 GTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGAC 1623 Query 30430 AAGACTCCCGTGCCCGTCCTGTC 30452 | | || |||||||| | ||| Sbjct 1622 AGGGTGCCGGTGCCCGTGCGGTC 1600 >seq273439 Length=4507 Score = 176 bits (194), Expect = 4e-39 Identities = 387/571 (68%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| || || || | || ||||| | |||||| | || | ||||||||||| Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | ||| || ||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||||| ||||| || | |||||||||| ||| |||| || || || ||| ||| Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || ||||||||||| ||||| || || ||||| || |||||| || || || | Sbjct 2276 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 2218 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063 | | |||| | | | || |||| ||| ||||| | ||||| || || | Sbjct 2217 --GGGCGGCA--GGGTATGA-----GAGG---AAGATCTTT-TGATTCCAAGCACATAGA 2171 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | |||||||| || ||| | |||| ||| | | |||||||| || || Sbjct 2170 ATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCT 2111 Query 30124 ACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30182 || || | || || | | || || |||| || || | ||| |||||| Sbjct 2110 ACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCCA 2051 Query 30183 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30242 ||| || | | || || || | || || ||||| ||| || || |||| Sbjct 2050 CTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTC 1991 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 ||| ||||||| ||| |||| ||| |||||||| || || ||||| || ||||| || Sbjct 1990 CAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTT 1931 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGC 30333 | |||||||| || ||| ||||||||| Sbjct 1930 AGCATTTGTGGAGCCCTTGATCAACCACAGC 1900 >seq397969 Length=7843 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||| | ||||| || || ||||| |||| | Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| ||||| || | || ||||||||| || || ||||||||| Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 4453 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 4394 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 4393 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 4334 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 4333 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 4286 >seq408533 Length=33819 Score = 102 bits (112), Expect = 7e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 27117 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27176 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 27177 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 27236 Query 112200 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231 ||| || || |||| ||||||| || | ||||| Sbjct 27237 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 27268 >seq317162 Length=29175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 112111 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 112170 || ||||| |||| || || ||||| | | ||||| |||||| || || ||||||||| Sbjct 9459 CTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAGAAC 9400 Query 112171 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTC 112230 || || || |||||||| |||||| ||||| || ||| |||||||| || | |||| Sbjct 9399 CATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC 9340 Query 112231 AAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCG 112290 | | | || | | | || || | || || |||| ||||| || ||| Sbjct 9339 ATTCTTTGGAAATACCTGTATTCATTCCTGAG------CGGGGGCCAGGGCAGGTCCCCG 9286 Query 112291 TTGTTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337 || || || ||||||||| ||||| |||| || ||||| | ||| || Sbjct 9285 TTCTTGCCAATGCCCATGTTCTGG-GACACAGCAACGATGCAGTTTAG 9239 >seq344518 Length=1300 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 112082 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCA 112141 ||||||| || || || || || || || |||| |||| || || ||||| || | Sbjct 823 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 882 Query 112142 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 112197 ||||| |||||| || || ||| |||||||| || || |||||||| ||||||| Sbjct 883 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 942 Query 112198 TTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTT 112256 ||||| || || |||| ||||||| || | ||||| | | || | | | || || Sbjct 943 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT 1001 Query 112257 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT 112309 | | ||||| |||| ||||| || | ||| || ||||||||||||| Sbjct 1002 CCTGA-----GCAGG-GGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGT 1048 >seq383823 Length=18616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 9583 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9524 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 9523 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406518797501012