Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq366024 150 3e-31 seq404197 122 2e-22 seq400361 87.8 3e-12 >seq366024 Length=42324 Score = 150 bits (166), Expect = 3e-31 Identities = 405/605 (67%), Gaps = 27/605 (4%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| ||||| ||| | || ||||| || |||||| | || Sbjct 17497 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGAC 17556 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | |||| | || || | || || ||| |||| | Sbjct 17557 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAGAT--ATTTCATTT 17614 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG- 25650 | | | |||| ||||||||||| |||||| ||||| || || || || ||| Sbjct 17615 CGCATATTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 17674 Query 25651 AGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 || || ||| | |||| ||| |||| || ||| |||||||| || |||| || | Sbjct 17675 AGTTTAGCCAAG-AAGTTCAGATTACG--GAAGCCCGTTGTTTCTATGGCTTCCTAATTG 17731 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 |||| ||||| | || ||||| ||||| | || || || || ||||||| || Sbjct 17732 CCATGGAAAACATCCATTCTGAAATGTAT---AGTCTCCTCATTGACACTTACATTAAAG 17788 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | || || || || || || || ||| || || | | |||| || Sbjct 17789 ATTCCAAAGAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGA 17848 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 |||| |||||| || |||||| ||| |||| ||||||| ||| || || Sbjct 17849 AGGCAGATTGGGCCTTGTGCTGGATCGGGGACAA--AGAG-GCTACGTATGGAGAACGTT 17905 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 | |||||||||||||| ||||| || ||||| || ||||| ||||| | || |||| Sbjct 17906 TCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 17965 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||| | | | || | || ||||| || |||||||| || || || ||||| Sbjct 17966 GGCTCAA-AAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGCAGA 18024 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 ||||||||| | ||| | || |||||||||||| | | || ||| |||| |||||| Sbjct 18025 GACGAGGGTTTACACTGTGACTTTGCCTGCCTGATATTCA---AACACCTGCTACACAAA 18081 Query 26062 CCTTC 26066 ||||| Sbjct 18082 CCTTC 18086 >seq404197 Length=65104 Score = 122 bits (134), Expect = 2e-22 Identities = 397/603 (66%), Gaps = 23/603 (4%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| |||||| ||||| ||| | || |||||| || || ||| | || Sbjct 52220 GATATTTGGCAGATGTGTAAGAACGCTGAGGCTTCCTTCTGGACGGCTGAGGAGGTGGAC 52279 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | | || | || || | || || ||| || |||| | Sbjct 52280 CTTTCCAAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAG--GAG-AGATATTTCACT 52336 Query 25592 A-GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | | || || | |||| |||||| ||| || |||| || || || ||| ||| Sbjct 52337 TCGCATGTCCTGCCTTTCTCTGCAGCAAGTGACGGCGTAGTAAATGAAAACCTGGTGGAG 52396 Query 25651 AGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 | | | | ||||| ||| |||| || ||| | | |||||| || ||||| || | Sbjct 52397 CGGCTTAGCCAAGAAGTTCAGATTACG--GAAGCCCATTATTTCTATGGCTTCCAAATCG 52454 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 |||| ||||| | || || || ||||| | || || || || |||||| || Sbjct 52455 CCATGGAAAACATACATTCGGAAATGTAT---AGTCTCCTCATTGACACTTACATTCAAG 52511 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | || || || || || ||||| ||| || || | | |||| || Sbjct 52512 ATTCCAAAGAAAGGGAATTTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGA 52571 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTG 25884 |||| |||||| || |||||| | | | ||| |||| || | |||| | Sbjct 52572 AGGCAGATTGGGCCTTGCGCTGGATCGAGGACAAAGAG-GCTAGGTACTGAAAGCGTGTC 52630 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||||||||| || ||||| || ||||| || ||||| ||||| | || |||||| Sbjct 52631 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 52690 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| |||||||| || |||||||| || || || ||||| || Sbjct 52691 CTCAAG-AAATGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 52749 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 ||||||| | ||| | || ||||||| |||| | | || ||| |||| |||||||| Sbjct 52750 CGAGGGTTTACACTGTGACTTTGCCTTCCTGATGTTCA---AACACCTGCTACACAAACC 52806 Query 26064 TTC 26066 ||| Sbjct 52807 TTC 52809 >seq400361 Length=55729 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 38548 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 38489 Query 25940 TCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTT-CCAACGAGCTCATCAG 25997 ||||||| ||| | ||| |||| ||||| || || ||||||| |||| || |||||||| Sbjct 38488 TCTGGCTAAAGAA-AAGAGGACTTATGCCTGGACT-TACTTTTTCCAATGAACTCATCAG 38431 Query 25998 CAGGGACGA 26006 ||| || || Sbjct 38430 CAGAGATGA 38422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923951599151360