Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq366492 351 1e-91
seq166535 183 3e-41
seq323636 107 2e-18
>seq366492
Length=15653
Score = 351 bits (388), Expect = 1e-91
Identities = 675/988 (68%), Gaps = 17/988 (2%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || ||
Sbjct 6186 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAACTTGTTGGC 6127
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
||||| ||||| || | | ||||||| || ||| || | ||||| ||||| ||
Sbjct 6126 GAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCGCTCCGAAAACGCACAC 6070
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| |||||| |||| |||||||| | || || || | | |||||||||
Sbjct 6069 GGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 6010
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct 6009 AAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGGACATGTCGTACTTATG 5950
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | | || || || |||| || | ||| | |||||||| || | ||
Sbjct 5949 GCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 5890
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA-TTAACCTGTCCCGCA 160410
||| |||||||| ||||| || | ||| ||||| | || | | || | || || |
Sbjct 5889 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAGCTTTTGTATTTTTTCATTCTCG-A 5831
Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470
| || | || || || | || ||||| || || ||||| || || | |||
Sbjct 5830 GCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 5771
Query 160471 TGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529
| | ||| || ||| |||||| || |||| | || | ||| ||||| |
Sbjct 5770 TTTCAAGAGGAGG-ATGTATTTTGTCGGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 5712
Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589
|| | |||| |||||||| | | || | | |||||| | || || ||||| ||
Sbjct 5711 GCATAATGCTTTTTCCACCTCTCTTTTTTATTGGATGGCATTCTCTCTGTTTCTAGGTTG 5652
Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649
|| | || | ||| || |||| | |||| || || ||||| || || | |||||
Sbjct 5651 TTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 5592
Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709
|| ||||||| | ||||||| ||||||||| | ||| ||| || |||||| |
Sbjct 5591 TCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTCGGTAGAGGTCCTGC 5532
Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769
||||| || | || ||||| || |||||||| || || ||||| || |||| || | |
Sbjct 5531 ATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAACACTCTCCAGCTGA 5472
Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA- 160825
|||||||| ||||| ||| |||||| || | || || ||| | |||| |||| |
Sbjct 5471 CTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCAATCACTGCGGCCAAAAAGGAT 5412
Query 160826 -CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884
| ||| || ||| |||||||| | |||||| | ||||||||| || || |
Sbjct 5411 TCCTCTGAT-----TTTGTATCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATAG 5357
Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944
|||| || | ||| || | ||| || || || ||||| | ||| | ||| || ||||| |
Sbjct 5356 CCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAGAATATGCTATTG 5297
Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004
||||||| | ||| || ||| |||| | | || || ||| ||||||| |||
Sbjct 5296 GAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCTTCTTGATGAAAG 5237
Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032
|| ||||||| | |||||||| || ||
Sbjct 5236 AAGCACAATCACTGGTCATGTTTATGTA 5209
>seq166535
Length=11532
Score = 183 bits (202), Expect = 3e-41
Identities = 227/311 (73%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| | | |||| || ||||| || || || || || |||||||||||| ||
Sbjct 4909 AGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTG 4850
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || ||||| || |||| |||||||||||| || || | |||||||| ||| |||
Sbjct 4849 TAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTGATGAGTCCC 4790
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || ||||| | ||| || || ||||| || ||||||| |
Sbjct 4789 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTCTGG 4730
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
|| |||||| |||||| || ||||| ||||| || || ||||| || || ||||||
Sbjct 4729 CTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAGA 4670
Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452
|| || | | ||||| || ||||| | ||||| || |||||||||| ||||
Sbjct 4669 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACTCTCTT 4610
Query 168453 TCATCTTGAGT 168463
||||||| ||
Sbjct 4609 ACATCTTGGGT 4599
Score = 105 bits (116), Expect = 8e-18
Identities = 158/221 (71%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941
|||| || ||| ||| || ||||| |||| || ||||||| ||| || || || ||
Sbjct 7521 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATAACATCC---TT 7466
Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001
|| || |||||||| || ||||| | || | ||||| || ||| ||| || |||||
Sbjct 7465 CCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTCCCATT 7406
Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061
| | ||| | | | | || |||||||||||| |||| || | ||||||||| | ||
Sbjct 7405 GGGGTGTGAGAGAATCTCAGTACTGTTCTCAATCTCTGAGCCAGAGACCTTCCAGGAGAT 7346
Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| ||| || || || || | |||||||| || |||||||
Sbjct 7345 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 7305
>seq323636
Length=64455
Score = 107 bits (118), Expect = 2e-18
Identities = 170/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| |||||| | | ||||| |||
Sbjct 22782 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 22723
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| || |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 22722 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 22663
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| || || || || ||||| | || || | | || | || |
Sbjct 22662 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 22603
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || |
Sbjct 22602 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 22543
Query 176422 TACA 176425
| ||
Sbjct 22542 TGCA 22539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574178380393440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |