Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq366024 154 2e-32 >seq366024 Length=42324 Score = 154 bits (170), Expect = 2e-32 Identities = 383/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||||||||| || |||||| || | ||| || ||| || | Sbjct 18053 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 17994 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 ||||| || | ||||| |||||| ||||| ||||||||||| ||| || ||||||||| Sbjct 17993 CCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 17934 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || || || ||| || || |||| || | ||| || | | | ||| | Sbjct 17933 ATTCCTTCCACTGCA-GCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCC 17875 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| ||||| ||| | | | ||| || || |||| ||||| || Sbjct 17874 GATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTT 17815 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 || | | || |||||||||||||||| || |||||||| || | | | |||||| Sbjct 17814 GAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACAT 17755 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 ||||||||| ||| ||||||| || || | || | ||| || | | || || | | Sbjct 17754 TTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAAT 17695 Query 18517 TTGAA--TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 |||| ||| | |||| | || ||||| || ||||| ||||| || ||| | | Sbjct 17694 CTGAACTTCTTG-GCTAAACT-GCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 17637 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || || |||| || || |||||||| | | || | | ||| || | ||| Sbjct 17636 GCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAG 17577 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | | || || || || || || || ||||| | ||||||||| || | || || | Sbjct 17576 TGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 17517 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||||| | ||||||| | | || |||||||| Sbjct 17516 TTATACATCTGCCAAATATCATGGTATTTGATAGGAAA 17479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728016461710400