Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 154 2e-32
>seq366024
Length=42324
Score = 154 bits (170), Expect = 2e-32
Identities = 383/578 (66%), Gaps = 6/578 (1%)
Strand=Plus/Minus
Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217
|| ||||| ||| ||||||||| || |||||| || | ||| || ||| || |
Sbjct 18053 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 17994
Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277
||||| || | ||||| |||||| ||||| ||||||||||| ||| || |||||||||
Sbjct 17993 CCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 17934
Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336
|| || || || ||| || || |||| || | ||| || | | | ||| |
Sbjct 17933 ATTCCTTCCACTGCA-GCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCC 17875
Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396
||||| ||||| ||| | | | ||| || || |||| ||||| ||
Sbjct 17874 GATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTT 17815
Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456
|| | | || |||||||||||||||| || |||||||| || | | | ||||||
Sbjct 17814 GAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACAT 17755
Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516
||||||||| ||| ||||||| || || | || | ||| || | | || || | |
Sbjct 17754 TTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAAT 17695
Query 18517 TTGAA--TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574
|||| ||| | |||| | || ||||| || ||||| ||||| || ||| | |
Sbjct 17694 CTGAACTTCTTG-GCTAAACT-GCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 17637
Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634
|| || || |||| || || |||||||| | | || | | ||| || | |||
Sbjct 17636 GCAAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAG 17577
Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694
| | || || || || || || || ||||| | ||||||||| || | || || |
Sbjct 17576 TGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 17517
Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732
|| ||||| | ||||||| | | || ||||||||
Sbjct 17516 TTATACATCTGCCAAATATCATGGTATTTGATAGGAAA 17479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 728016461710400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |